Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens (Q43252041)

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scientific article published on 31 October 2009

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English	Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens	scientific article published on 31 October 2009

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instance of

scholarly article

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

title

Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens (English)

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

main subject

Physcomitrella patens

object named as

Physcomitrella patens

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inferred from title

author

Che C Colpitts

series ordinal

4

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

author name string

P K Harshavardhan Koduri

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1

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

Graeme S Gordon

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2

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Europe PubMed Central

PubMed publication ID

19876746

retrieved

17 November 2017

Elizabeth I Barker

series ordinal

3

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Europe PubMed Central

PubMed publication ID

19876746

retrieved

17 November 2017

Neil W Ashton

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5

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

Dae-Yeon Suh

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6

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

publication date

31 October 2009

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

number of pages

17

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published in

Plant Molecular Biology

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

volume

72

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

issue

3

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

page(s)

247-263

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Europe PubMed Central

PubMed publication ID

19876746

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17 November 2017

cites work

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A CACGTG motif of the Antirrhinum majus chalcone synthase promoter is recognized by an evolutionarily conserved nuclear protein

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The chalcone synthase multigene family of Petunia hybrida (V30): differential, light-regulated expression during flower development and UV light induction

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Representation and high-quality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses

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Selection of AUG initiation codons differs in plants and animals

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Structural insight into chain-length control and product specificity of pentaketide chromone synthase from Aloe arborescens

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Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution

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Site-directed mutagenesis of benzalacetone synthase. The role of the Phe215 in plant type III polyketide synthases

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Structure function analysis of novel type III polyketide synthases from Arabidopsis thaliana

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Male-fertility genes expressed in male flower buds of Silene latifolia include homologs of anther-specific genes.

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p-Coumaroyltriacetic acid synthase, a new homologue of chalcone synthase, from Hydrangea macrophylla var. thunbergii

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A novel type III polyketide synthase encoded by a three-intron gene from Polygonum cuspidatum

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Benzophenone synthase and chalcone synthase from Hypericum androsaemum cell cultures: cDNA cloning, functional expression, and site-directed mutagenesis of two polyketide synthases.

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Expression analysis of four Pinus radiata male cone promoters in the heterologous host Arabidopsis

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12 December 2020

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Context sequences of translation initiation codon in plants

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12 December 2020

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Flavonoid evolution: an enzymic approach

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12 December 2020

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Bacterial type III polyketide synthases: phylogenetic analysis and potential for the production of novel secondary metabolites by heterologous expression in pseudomonads

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https://pubmed.ncbi.nlm.nih.gov/19876746

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MrBayes 3: Bayesian phylogenetic inference under mixed models

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PubMed

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Effects of seven pure flavonoids from mosses on germination and growth of Tortula muralis HEDW (Bryophyta) and Raphanus sativus L (Magnoliophyta).

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Genomic organization of plant terpene synthases and molecular evolutionary implications

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Multifunctionality and diversity within the plant MYB-gene family

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protochlorophyllide reduction: a key step in the greening of plants

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phlorisovalerophenone synthase, a novel polyketide synthase from hop (Humulus lupulus L.) cones

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissection of malonyl-coenzyme A decarboxylation from polyketide formation in the reaction mechanism of a plant polyketide synthase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of conserved outer sphere arginine residues of chalcone synthase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chalcone synthase superfamily of type III polyketide synthases

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19876746

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A chalcone synthase-like gene is highly expressed in the tapetum of both wheat (Triticum aestivum L.) and triticale (xTriticosecale Wittmack).

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physcomitrella patens: mosses enter the genomic age.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanding the biosynthetic repertoire of plant type III polyketide synthases by altering starter molecule specificity

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of an anther-specific chalcone synthase-like gene is correlated with uninucleate microspore development in Nicotiana sylvestris.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19876746

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for catalytic cysteine-histidine dyad in chalcone synthase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and characterization of chalcone synthase from the moss, Physcomitrella patens

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential regulation of soybean chalcone synthase genes in plant defence, symbiosis and upon environmental stimuli

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Engineered biosynthesis of plant polyketides: chain length control in an octaketide-producing plant type III polyketide synthase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Molecular evolution of the chalcone synthase multigene family in the morning glory genome

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Molecular evolution and functional specialization of chalcone synthase superfamily from Phalaenopsis orchid

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of chalcone synthase. pKa of the catalytic cysteine and the role of the conserved histidine in a plant polyketide synthase.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Structure of chalcone synthase and the molecular basis of plant polyketide biosynthesis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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BLAST Filter and GraphAlign: rule-based formation and analysis of sets of related DNA and protein sequences

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combination of H-box [CCTACC(N)7CT] and G-box (CACGTG) cis elements is necessary for feed-forward stimulation of a chalcone synthase promoter by the phenylpropanoid-pathway intermediate p-coumaric acid

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Statistical tests for detecting gene conversion.

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PubMed

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12 December 2020

based on heuristic

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Phenolic lipid synthesis by type III polyketide synthases is essential for cyst formation in Azotobacter vinelandii

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of amino acid residues important in the cyclization reactions of chalcone and stilbene synthases

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural control of polyketide formation in plant-specific polyketide synthases

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant defense genes associated with quantitative resistance to potato late blight in Solanum phureja x dihaploid S. tuberosum hybrids

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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inferred from PubMed ID database lookup

Biphenyl synthase, a novel type III polyketide synthase.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of legumin genes: loss of an ancestral intron at the beginning of angiosperm diversification

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Seeing double: gene duplication and diversification in plant secondary metabolism

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Molecular analysis of chalcone and dihydropinosylvin synthase from Scots pine (Pinus sylvestris), and differential regulation of these and related enzyme activities in stressed plants

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Intron loss and gain during evolution of the catalase gene family in angiosperms

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

based on heuristic

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Diverse chalcone synthase superfamily enzymes from the most primitive vascular plant, Psilotum nudum

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Expression analysis of anthocyanin regulatory genes in response to different light qualities in Arabidopsis thaliana

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Divergent evolution of the thiolase superfamily and chalcone synthase family.

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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The role of cysteines in polyketide synthases. Site-directed mutagenesis of resveratrol and chalcone synthases, two key enzymes in different plant-specific pathways

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Pentaketide resorcylic acid synthesis by type III polyketide synthase from Neurospora crassa

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19876746

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12 December 2020

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Estimation of indole-3-acetic acid in gametophytes of the moss, Physcomitrella patens

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COCI

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11 May 2024

reference URL

https://opencitations.net/index/api/v1/citations/10.1007/BF00391040

Identifiers

DOI

10.1007/S11103-009-9565-Z

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19876746

retrieved

17 November 2017

Dimensions Publication ID

1048691301

0 references

PubMed publication ID

19876746

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19876746

retrieved

17 November 2017

ResearchGate publication ID

38055188

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