A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. (Q43048971)

12 November 2017

A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. (English)

1 reference

12 November 2017

Eva Scheuring Vanamee

1 reference

12 November 2017

Hector Viadiu

1 reference

12 November 2017

Rebecca Kucera

1 reference

12 November 2017

Lydia Dorner

1 reference

12 November 2017

Stephen Picone

1 reference

12 November 2017

Ira Schildkraut

1 reference

12 November 2017

Aneel K Aggarwal

1 reference

12 November 2017

language of work or name

English

0 references

publication date

24 November 2005

1 reference

12 November 2017

1 reference

12 November 2017

1 reference

12 November 2017

1 reference

12 November 2017

4198-4208

1 reference

Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Type II restriction endonucleases: structure and mechanism

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

A homology model of restriction endonuclease SfiI in complex with DNA

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

REBASE--restriction enzymes and DNA methyltransferases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystallization of restriction endonuclease SfiI in complex with DNA.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Communications between catalytic sites in the protein-DNA synapse by the SfiI endonuclease

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Unexpected structural diversity in DNA recombination: the restriction endonuclease connection

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Reactions of type II restriction endonucleases with 8-base pair recognition sites

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Specificity from the synapsis of DNA elements by the Sfi I endonuclease

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

The role of metals in catalysis by the restriction endonuclease BamHI

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

DNA looping by the Sfi I restriction endonuclease

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Effect of supercoiling on the juxtaposition and relative orientation of DNA sites

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of Citrobacter freundii restriction endonuclease Cfr10I at 2.15 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Protein structure comparison by alignment of distance matrices

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Structure of restriction endonuclease BamHI and its relationship to EcoRI.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Structure of PvuII endonuclease with cognate DNA

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Structure and function of restriction endonucleases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Saturation mutagenesis of His114 of EcoRI reveals relaxed-specificity mutants

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

A type II restriction endonuclease with an eight nucleotide specificity fromStreptomyces fimbriatus

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

The interpretation of protein structures: Estimation of static accessibility

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of trp repressor/operator complex at atomic resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Recognition of a DNA operator by the repressor of phage 434: a view at high resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymatic activity, not, however, the preference of this restriction endonuclease for cleavage within the site-GAATTC-.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Improved methods for building protein models in electron density maps and the location of errors in these models

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Combinatorial mutagenesis of three major groove-contacting residues of EcoRI: single and double amino acid replacements retaining methyltransferase-sensitive activities

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Substrate recognition by the EcoRI endonuclease.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

DNA excision by the Sfi I restriction endonuclease

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Mutational analysis of the function of Met137 and Ile197, two amino acids implicated in sequence-specific DNA recognition by the EcoRI endonuclease.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Purification and characterisation of the SfiI restriction endonuclease.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

Site-directed mutagenesis in the catalytic center of the restriction endonuclease EcoRI.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

An Asymmetric Complex of Restriction Endonuclease MspI on Its Palindromic DNA Recognition Site

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1356319

PROCHECK: a program to check the stereochemical quality of protein structures

30 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7600880

Dynamics of DNA loop capture by the SfiI restriction endonuclease on supercoiled and relaxed DNA

21 January 2018

1 reference

12 December 2020

Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions

1 reference

12 December 2020

DNA topoisomerase and recombinase activities in Nae I restriction endonuclease

1 reference

12 December 2020

The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence

1 reference

12 December 2020

DNA cleavage at two recognition sites by the SfiI restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites

1 reference

12 December 2020

Phosphorothioate substrates for the SfiI restriction endonuclease

1 reference

12 December 2020

Genetic analysis of the base-specific contacts of BamHI restriction endonuclease

1 reference

12 December 2020

DNA restriction dependent on two recognition sites: activities of the SfiI restriction-modification system in Escherichia coli

1 reference

12 December 2020

Implications for switching restriction enzyme specificities from the structure of BstYI bound to a BglII DNA sequence

1 reference

12 December 2020

Alternative geometries of DNA looping: an analysis using the SfiI endonuclease

1 reference

12 December 2020

FokI requires two specific DNA sites for cleavage

1 reference

12 December 2020

DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites

1 reference

12 December 2020

The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence

1 reference

12 December 2020

Identifiers

DOI

10.1038/SJ.EMBOJ.7600880

1 reference

12 November 2017

1 reference

12 November 2017

PubMed publication ID

16308566

1 reference