NikR is a ribbon-helix-helix DNA-binding protein (Q42846792)

8 November 2017

NikR is a ribbon-helix-helix DNA-binding protein (English)

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8 November 2017

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8 November 2017

R T Sauer

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8 November 2017

1 November 1999

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8 November 2017

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8 November 2017

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8 November 2017

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8 November 2017

2494-2500

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Twilight zone of protein sequence alignments

8 November 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Tolerance of Arc repressor to multiple-alanine substitutions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Protein–protein interactions among the Aux/IAA proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Protein fold recognition using sequence-derived predictions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

DNA recognition by beta-sheets in the Arc repressor-operator crystal structure

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Electrostatic activation of Escherichia coli methionine repressor

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Solution structure of dimeric Mnt repressor (1-76)

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

The nik operon of Escherichia coli encodes a periplasmic binding-protein-dependent transport system for nickel

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

The beta-ribbon DNA recognition motif

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Improving the sensitivity of the sequence profile method

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Bacteriophage P22 Mnt repressor. DNA binding and effects on transcription in vitro.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Isolation and analysis of arc repressor mutants: evidence for an unusual mechanism of DNA binding

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Nickel utilization by microorganisms

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Identifying determinants of folding and activity for a protein of unknown structure

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Equilibrium dissociation and unfolding of the Arc repressor dimer

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Identification of functionally important residues in the DNA binding region of the mnt repressor

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

TraY proteins of F and related episomes are members of the Arc and Mnt repressor family

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Transcription factors: structural families and principles of DNA recognition

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Probing met repressor-operator recognition in solution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144182

P22 Arc repressor: folding kinetics of a single-domain, dimeric protein

27 May 2018

1 reference

12 December 2020

P22 Arc repressor: role of cooperativity in repression and binding to operators with altered half-site spacing

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12 December 2020

Scanning mutagenesis of the Arc represser as a functional probe of operator recognition

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12 December 2020

Protein stability effects of a complete set of alanine substitutions in Arc repressor

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12 December 2020

Nonlinear free energy relationships in Arc repressor unfolding imply the existence of unstable, native-like folding intermediates

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12 December 2020

Biophysical characterization of the TraY protein of Escherichia coli F factor

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12 December 2020

Identifiers

DOI

10.1110/PS.8.11.2494

1 reference

8 November 2017

1 reference

PMC publication ID

2144182

8 November 2017

PubMed publication ID

10595554

1 reference

PMC publication ID

2144182