Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage (Q42773427)

7 November 2017

title

Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage (English)

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7 November 2017

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7 November 2017

Eugen I Urzica

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Crysten E Blaby-Haas

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Matteo Pellegrini

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Sabeeha S Merchant

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7 November 2017

Hiroaki Yamasaki

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7 November 2017

Scott I Hsieh

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7 November 2017

Lital N Adler

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7 November 2017

Steven J Karpowicz

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7 November 2017

Steven G Clarke

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7 November 2017

Joseph A Loo

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7 November 2017

publication date

5 October 2012

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7 November 2017

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7 November 2017

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7 November 2017

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7 November 2017

page(s)

3921-3948

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Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii

7 November 2017

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27 August 2018

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27 August 2018

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27 August 2018

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Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

27 August 2018

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The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots

27 August 2018

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Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis

27 August 2018

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27 August 2018

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27 August 2018

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27 August 2018

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A novel negative Fe-deficiency-responsive element and a TGGCA-type-like FeRE control the expression of FTR1 in Chlamydomonas reinhardtii

27 August 2018

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Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B.

27 August 2018

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The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis.

27 August 2018

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An E3 ligase possessing an iron-responsive hemerythrin domain is a regulator of iron homeostasis

27 August 2018

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Control of iron homeostasis by an iron-regulated ubiquitin ligase

27 August 2018

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27 August 2018

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Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae

27 August 2018

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27 August 2018

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Pattern of expression and substrate specificity of chloroplast ferredoxins from Chlamydomonas reinhardtii

27 August 2018

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Dissecting iron deficiency-induced proton extrusion in Arabidopsis roots.

27 August 2018

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Homing in on iron homeostasis in plants.

27 August 2018

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An Fe deficiency responsive element with a core sequence of TGGCA regulates the expression of FEA1 in Chlamydomonas reinharditii

27 August 2018

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A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor

27 August 2018

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Early iron-deficiency-induced transcriptional changes in Arabidopsis roots as revealed by microarray analyses

27 August 2018

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Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

27 August 2018

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The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

27 August 2018

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Proteomics of metal mediated protein dynamics in plants - iron and cadmium in the focus

27 August 2018

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Carbon-concentrating mechanism in a green alga, Chlamydomonas reinhardtii, revealed by transcriptome analyses.

27 August 2018

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SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis

27 August 2018

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The role of Dcytb in iron metabolism: an update

27 August 2018

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An MYB transcription factor from Malus xiaojinensis has a potential role in iron nutrition

27 August 2018

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Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

27 August 2018

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Chloroplast Fe(III) chelate reductase activity is essential for seedling viability under iron limiting conditions

27 August 2018

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27 August 2018

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FER1 and FER2 encoding two ferritin complexes in Chlamydomonas reinhardtii chloroplasts are regulated by iron

27 August 2018

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Proteomic response to iron deficiency in tomato root

27 August 2018

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Cell identity mediates the response of Arabidopsis roots to abiotic stress.

27 August 2018

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Maturation of iron-sulfur proteins in eukaryotes: mechanisms, connected processes, and diseases

27 August 2018

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Ferritin is required for rapid remodeling of the photosynthetic apparatus and minimizes photo-oxidative stress in response to iron availability in Chlamydomonas reinhardtii.

27 August 2018

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FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis

27 August 2018

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A ferroxidase encoded by FOX1 contributes to iron assimilation under conditions of poor iron nutrition in Chlamydomonas

27 August 2018

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27 August 2018

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Response to iron deprivation in Saccharomyces cerevisiae

27 August 2018

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Regulation of iron acquisition and storage: consequences for iron-linked disorders

27 August 2018

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Two iron-responsive promoter elements control expression of FOX1 in Chlamydomonas reinhardtii

27 August 2018

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A novel Fe deficiency-responsive element (FeRE) regulates the expression of atx1 in Chlamydomonas reinharditii

27 August 2018

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The metalloreductase Fre6p in Fe-efflux from the yeast vacuole

27 August 2018

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FEA1, FEA2, and FRE1, encoding two homologous secreted proteins and a candidate ferrireductase, are expressed coordinately with FOX1 and FTR1 in iron-deficient Chlamydomonas reinhardtii

27 August 2018

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FIT, the FER-LIKE IRON DEFICIENCY INDUCED TRANSCRIPTION FACTOR in Arabidopsis.

27 August 2018

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Arabidopsis VTC2 encodes a GDP-L-galactose phosphorylase, the last unknown enzyme in the Smirnoff-Wheeler pathway to ascorbic acid in plants

27 August 2018

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Recent progress in structure-function analyses of Nramp proton-dependent metal-ion transporters

27 August 2018

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27 August 2018

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Manganese deficiency in Chlamydomonas results in loss of photosystem II and MnSOD function, sensitivity to peroxides, and secondary phosphorus and iron deficiency

27 August 2018

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27 August 2018

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27 August 2018

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Transgenic expression of DwMYB2 impairs iron transport from root to shoot in Arabidopsis thaliana

27 August 2018

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An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness

27 August 2018

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An ascorbate-reducible cytochrome b561 is localized in macrophage lysosomes

27 August 2018

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Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants

27 August 2018

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Three mammalian cytochromes b561 are ascorbate-dependent ferrireductases

27 August 2018

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The NRAMP family of metal-ion transporters

27 August 2018

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Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants.

27 August 2018

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Iron uptake in fungi: a system for every source

27 August 2018

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AtIREG2 encodes a tonoplast transport protein involved in iron-dependent nickel detoxification in Arabidopsis thaliana roots

27 August 2018

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Between a rock and a hard place: trace element nutrition in Chlamydomonas

27 August 2018

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Heavy Metal-Activated Synthesis of Peptides in Chlamydomonas reinhardtii

27 August 2018

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Effects of Iron and Oxygen on Chlorophyll Biosynthesis : I. IN VIVO OBSERVATIONS ON IRON AND OXYGEN-DEFICIENT PLANTS.

27 August 2018

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Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale

27 August 2018

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A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element

27 August 2018

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Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron.

27 August 2018

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Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

27 August 2018

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AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants

27 August 2018

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Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtii

27 August 2018

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A gene expression map of Arabidopsis thaliana development

27 August 2018

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The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project.

27 August 2018

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Iron-mediated control of the basic helix-loop-helix protein FER, a regulator of iron uptake in tomato.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Higher plant-like subunit composition of mitochondrial complex I from Chlamydomonas reinhardtii: 31 conserved components among eukaryotes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Iron, ferritin, and nutrition

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Properties of two distinct heme centers of cytochrome b561 from bovine chromaffin vesicles studied by EPR, resonance Raman, and ascorbate reduction assay

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Stromal cell-derived receptor 2 and cytochrome b561 are functional ferric reductases

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Iron deficiency enhances the levels of ascorbate, glutathione, and related enzymes in sugar beet roots

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

AtNRAMP3, a multispecific vacuolar metal transporter involved in plant responses to iron deficiency

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Iron uptake, trafficking and homeostasis in plants.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Induction of the ZRC1 metal tolerance gene in zinc-limited yeast confers resistance to zinc shock

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Copper-dependent iron assimilation pathway in the model photosynthetic eukaryote Chlamydomonas reinhardtii

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Chemical strategies for iron acquisition in plants

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Ceruloplasmin metabolism and function

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

The polyphosphate bodies of Chlamydomonas reinhardtii possess a proton-pumping pyrophosphatase and are similar to acidocalcisomes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

CCC1 is a transporter that mediates vacuolar iron storage in yeast

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

An iron-regulated ferric reductase associated with the absorption of dietary iron

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Regulation of plant ferritin synthesis: how and why.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Saccharomyces cerevisiae expresses three functionally distinct homologues of the nramp family of metal transporters

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Psr1, a nuclear localized protein that regulates phosphorus metabolism in Chlamydomonas

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

A hidden Markov model for predicting transmembrane helices in protein sequences

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Copper-responsive gene expression during adaptation to copper deficiency

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Microcytic anaemia mice have a mutation in Nramp2, a candidate iron transporter gene

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Characterization and partial purification of a ferrireductase from human duodenal microvillus membranes

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Mechanism of ascorbic acid regeneration mediated by cytochrome b561.

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

A Chlamydomonas gene encodes a G protein beta subunit-like polypeptide

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Cytochrome b561, ascorbic acid, and transmembrane electron transfer

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Purification of cytochrome b-561 from bean hypocotyls plasma membrane. Evidence for the presence of two heme centers

27 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3517228

Iron homeostasis: insights from genetics and animal models

3 November 2018

1 reference

12 December 2020

Iron: Nutritious, Noxious, and Not Readily Available

1 reference

12 December 2020

FRU(BHLH029) is required for induction of iron mobilization genes inArabidopsis thaliana

1 reference

12 December 2020

N-terminal processing of Lhca3 Is a key step in remodeling of the photosystem I-light-harvesting complex under iron deficiency in Chlamydomonas reinhardtii

1 reference

12 December 2020

Quantitative proteomic analysis by accurate mass retention time pairs

1 reference

12 December 2020

Photosynthesis-deficient Mutants of Chlamydomonas reinhardii with Associated Light-sensitive Phenotypes

1 reference

12 December 2020

Increased senescence-associated gene expression and lipid peroxidation induced by iron deficiency in rice roots

1 reference

12 December 2020

Comparative quantitative proteomics to investigate the remodeling of bioenergetic pathways under iron deficiency inChlamydomonas reinhardtii

1 reference

12 December 2020

Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings

1 reference

12 December 2020

Transcriptional profiling of the Arabidopsis iron deficiency response reveals conserved transition metal homeostasis networks

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Identifiers

DOI

10.1105/TPC.112.102491

1 reference

7 November 2017

0 references

1 reference