Secondary structure and mutational analysis of the ribosomal frameshift signal of rous sarcoma virus (Q42686259)

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scientific article published on November 1998

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English	Secondary structure and mutational analysis of the ribosomal frameshift signal of rous sarcoma virus	scientific article published on November 1998

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

title

Secondary structure and mutational analysis of the ribosomal frameshift signal of rous sarcoma virus (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

main subject

mutational analysis

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based on heuristic

inferred from title

Rous sarcoma virus

object named as

rous sarcoma virus

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based on heuristic

inferred from title

author name string

B Marczinke

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

R Fisher

series ordinal

2

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stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

M Vidakovic

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

A J Bloys

series ordinal

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

I Brierley

series ordinal

5

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

language of work or name

English

0 references

publication date

1 November 1998

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

published in

Journal of Molecular Biology

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stated in

Europe PubMed Central

PubMed publication ID

9813113

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4 November 2017

volume

284

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stated in

Europe PubMed Central

PubMed publication ID

9813113

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4 November 2017

issue

2

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stated in

Europe PubMed Central

PubMed publication ID

9813113

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4 November 2017

page(s)

205-225

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Europe PubMed Central

PubMed publication ID

9813113

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4 November 2017

cites work

Adaptor plasmids simplify the insertion of foreign DNA into helper-independent retroviral vectors

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence relationships of type D retroviruses which cause simian acquired immunodeficiency syndrome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the RNA pseudoknot involved in efficient ribosomal frameshifting in simian retrovirus-1

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal pausing during translation of an RNA pseudoknot

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing the structure of RNAs in solution

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid and efficient site-specific mutagenesis without phenotypic selection

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temperature dependent chemical and enzymatic probing of the tRNA-like structure of TYMV RNA.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA pseudoknots. Stability and loop size requirements

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nidovirales: a new order comprising Coronaviridae and Arteriviridae

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of Rous sarcoma virus

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of Mason-Pfizer monkey virus: an immunosuppressive D-type retrovirus

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning, complete nucleotide sequence, and gene structure of the provirus genome of a retrovirus produced in a human lymphoblastoid cell line

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Programmed translational frameshifting

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficientin vitrosynthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HPRS-103 (exogenous avian leukosis virus, subgroup J) has an env gene related to those of endogenous elements EAV-0 and E51 and an E element found previously only in sarcoma viruses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal frameshifting on viral RNAs

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An improved filamentous helper phage for generating single-stranded plasmid DNA.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteolytic Cleavage at the Gag-Pol Junction in Avian Leukosis Virus: Differences in Vitro and in Vivo

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning and characterization of avian sarcoma virus circular DNA molecules

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemical and computer probing of RNA structure.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of SRV-1, a type D simian acquired immune deficiency syndrome retrovirus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and analysis of the site of -1 ribosomal frameshifting in red clover necrotic mosaic virus

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequencing with chain-terminating inhibitors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[4] Preparation and use of nuclease-treated rabbit reticulocyte lysates for the translation of eukaryotic messenger RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional aspects of RNA pseudoknots

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional analysis of bacteriophage f1 intergenic region

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of a highly infectious avian leukosis virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome organization of a biologically active molecular clone of the lymphoproliferative disease virus of turkeys

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9813113

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12 December 2020

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Identifiers

DOI

10.1006/JMBI.1998.2186

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

PMC publication ID

7126186

0 references

PubMed publication ID

9813113

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9813113

retrieved

4 November 2017

 

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