Essential elements of a licensed, mammalian plasmid origin of DNA synthesis. (Q42678529)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16428463%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Essential elements of a licensed, mammalian plasmid origin of DNA synthesis (English)

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15 January 2020

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15 January 2020

Jindong Wang

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15 January 2020

Elizabeth R Leight

series ordinal

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15 January 2020

Bill Sugden

series ordinal

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15 January 2020

language of work or name

English

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publication date

1 February 2006

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Molecular and Cellular Biology

15 January 2020

published in

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15 January 2020

volume

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15 January 2020

issue

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15 January 2020

page(s)

1124-1134

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NFI and Oct-1 bend the Ad5 origin in the same direction leading to optimal DNA replication

15 January 2020

cites work

1 reference

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The amino terminus of Epstein-Barr Virus (EBV) nuclear antigen 1 contains AT hooks that facilitate the replication and partitioning of latent EBV genomes by tethering them to cellular chromosomes

27 May 2018

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Protein and sequence requirements for the recruitment of the human origin recognition complex to the latent cycle origin of DNA replication of Epstein-Barr virus oriP.

27 May 2018

1 reference

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Plasticity of DNA replication initiation in Epstein-Barr virus episomes

27 May 2018

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Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer.

27 May 2018

1 reference

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Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin

27 May 2018

1 reference

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Modular structure of the human lamin B2 replicator

27 May 2018

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DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding

27 May 2018

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Sequence-independent DNA binding and replication initiation by the human origin recognition complex

27 May 2018

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Multiple functional elements comprise a Mammalian chromosomal replicator

27 May 2018

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The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity

27 May 2018

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Purification and characterization of the Schizosaccharomyces pombe origin recognition complex: interaction with origin DNA and Cdc18 protein

27 May 2018

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The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein

27 May 2018

1 reference

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Replication from oriP of Epstein-Barr virus requires exact spacing of two bound dimers of EBNA1 which bend DNA.

27 May 2018

1 reference

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The replicator of the Epstein-Barr virus latent cycle origin of DNA replication, oriP, is composed of multiple functional elements

27 May 2018

1 reference

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Use of chromatin immunoprecipitation to clone novel E2F target promoters

27 May 2018

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Human DNA replication initiation factors, ORC and MCM, associate with oriP of Epstein-Barr virus

27 May 2018

1 reference

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Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein-Barr virus

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Mre11 complex and DNA replication: linkage to E2F and sites of DNA synthesis

27 May 2018

1 reference

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Establishment of an oriP replicon is dependent upon an infrequent, epigenetic event

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Maintenance of Epstein-Barr virus (EBV) oriP-based episomes requires EBV-encoded nuclear antigen-1 chromosome-binding domains, which can be replaced by high-mobility group-I or histone H1.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

The Chinese hamster dihydrofolate reductase replication origin beta is active at multiple ectopic chromosomal locations and requires specific DNA sequence elements for activity

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Initiation of eukaryotic DNA replication: conservative or liberal?

27 May 2018

1 reference

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Separate domains in E1 and E2 proteins serve architectural and productive roles for cooperative DNA binding

27 May 2018

1 reference

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The minimal replicator of Epstein-Barr virus oriP.

27 May 2018

1 reference

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Start sites of bidirectional DNA synthesis at the human lamin B2 origin

27 May 2018

1 reference

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Fusions between Epstein-Barr viral nuclear antigen-1 of Epstein-Barr virus and the large T-antigen of simian virus 40 replicate their cognate origins

27 May 2018

1 reference

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AT-hook motifs identified in a wide variety of DNA-binding proteins

27 May 2018

1 reference

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Identification of primary initiation sites for DNA replication in the hamster dihydrofolate reductase gene initiation zone.

27 May 2018

1 reference

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Rep*: a viral element that can partially replace the origin of plasmid DNA synthesis of Epstein-Barr virus.

27 May 2018

1 reference

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Architecture of the yeast origin recognition complex bound to origins of DNA replication

27 May 2018

1 reference

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Dominant-negative inhibitors of EBNA-1 of Epstein-Barr virus.

27 May 2018

1 reference

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Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein, EBNA1, bound to DNA.

27 May 2018

1 reference

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The migration behaviour of DNA replicative intermediates containing an internal bubble analyzed by two-dimensional agarose gel electrophoresis

27 May 2018

1 reference

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Retention of plasmid DNA in mammalian cells is enhanced by binding of the Epstein-Barr virus replication protein EBNA1.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Sequence requirements of the Epstein-Barr virus latent origin of DNA replication

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Plasmid maintenance of derivatives of oriP of Epstein-Barr virus

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Initiation of latent DNA replication in the Epstein-Barr virus genome can occur at sites other than the genetically defined origin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

A cis-acting element from the Epstein-Barr viral genome that permits stable replication of recombinant plasmids in latently infected cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

The locus of sequence-directed and protein-induced DNA bending

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Replication of latent Epstein-Barr virus genomes in Raji cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Mapping genetic elements of Epstein-Barr virus that facilitate extrachromosomal persistence of Epstein-Barr virus-derived plasmids in human cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Sequence-specific DNA binding of the Epstein-Barr virus nuclear antigen (EBNA-1) to clustered sites in the plasmid maintenance region

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Stable replication of plasmids derived from Epstein-Barr virus in various mammalian cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Direct evidence for DNA bending at the lambda replication origin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Plasmid origin of replication of Epstein-Barr virus, oriP, does not limit replication in cis.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

The localization of replication origins on ARS plasmids in S. cerevisiae

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

The Epstein-Barr virus origin of plasmid replication, oriP, contains both the initiation and termination sites of DNA replication

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Definition of the sequence requirements for binding of the EBNA-1 protein to its palindromic target sites in Epstein-Barr virus DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Multiple replication origins are used during Drosophila chorion gene amplification

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Differential induction of structural changes in the simian virus 40 origin of replication by T antigen

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Epstein-Barr virus-derived plasmids replicate only once per cell cycle and are not amplified after entry into cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Role of EBNA-1 in arresting replication forks at the Epstein-Barr virus oriP family of tandem repeats

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Establishment and characterization of an Epstein-Barr virus (EBC)-negative lymphoblastoid B cell line (BJA-B) from an exceptional, EBV-genome-negative African Burkitt's lymphoma

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Development of an epitope tag for the gentle purification of proteins by immunoaffinity chromatography: application to epitope-tagged green fluorescent protein.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Complex protein-DNA dynamics at the latent origin of DNA replication of Epstein-Barr virus

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Role for a Drosophila Myb-containing protein complex in site-specific DNA replication.

16 August 2018

1 reference

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Telomeric proteins regulate episomal maintenance of Epstein-Barr virus origin of plasmid replication

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347036

Chromosomal ARS1 has a single leading strand start site

16 August 2018

1 reference

12 December 2020

Induction of a deoxycytidineless state in cultured mammalian cells by bromodeoxyuridine

1 reference

12 December 2020

Electroporation: parameters affecting transfer of DNA into mammalian cells

1 reference

12 December 2020

Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector

1 reference

12 December 2020

Mapping replication origins, pause sites, and termini by neutral/alkaline two-dimensional gel electrophoresis

1 reference

12 December 2020

10.1128/MCB.26.3.1124-1134.2006

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16428463%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16428463%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

16428463

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16428463%20AND%20SRC:MED&resulttype=core&format=json