Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match (Q42326397)

From Wikidata

Jump to navigation Jump to search

scientific article published on 22 August 2012

Language	Label	Description	Also known as
English	Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match	scientific article published on 22 August 2012

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match (English)

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

1 reference

based on heuristic

inferred from title

author name string

Ray M Marín

1

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

Franziska Voellmy

2

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

Thibaud von Erlach

3

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

Jiří Vaníček

4

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

language of work or name

0 references

publication date

22 August 2012

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

18

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

1760-1770

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

Structure of yeast Argonaute with guide RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The Structure of Human Argonaute-2 in Complex with miR-20a

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The Crystal Structure of Human Argonaute2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Optimal use of conservation and accessibility filters in microRNA target prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

An alternative mode of microRNA target recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Experimental strategies for microRNA target identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The impact of miRNA target sites in coding sequences and in 3'UTRs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Improving performance of mammalian microRNA target prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Efficient use of accessibility in microRNA target prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Computational methods to identify miRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Experimental identification of microRNA targets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

MicroRNAs: target recognition and regulatory functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

miRecords: an integrated resource for microRNA-target interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The database of experimentally supported targets: a functional update of TarBase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Structure of the guide-strand-containing argonaute silencing complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Widespread changes in protein synthesis induced by microRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The impact of microRNAs on protein output

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Molecular architecture of a miRNA-regulated 3' UTR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Suppression of immediate-early viral gene expression by herpesvirus-coded microRNAs: implications for latency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Impact of target mRNA structure on siRNA silencing efficiency: A large-scale study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Experimental validation of miRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The role of site accessibility in microRNA target recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Molecular basis for target RNA recognition and cleavage by human RISC.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Thermodynamics of RNA-RNA binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Human microRNAs target a functionally distinct population of genes with AT-rich 3' UTRs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Incorporating structure to predict microRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Principles of microRNA-target recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Fast and effective prediction of microRNA/target duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

Specificity of microRNA target selection in translational repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

29 May 2018

The impact of target site accessibility on the design of effective siRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

17 August 2018

Potent effect of target structure on microRNA function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

17 August 2018

Local RNA base pairing probabilities in large sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

17 August 2018

Target site effects in the RNA interference and microRNA pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3446701

1 December 2018

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22915600

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1261/RNA.033282.112

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

release_ligufkl5yfctzkwttklxlg7x5e

1 reference

https://api.fatcat.wiki/v0/release/ligufkl5yfctzkwttklxlg7x5e

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

26 October 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q42326397&oldid=2076003061"