Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from paracoccus denitrificans investigated by continuum electrostatic calculations (Q42180770)

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scientific article published on October 2005

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English	Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from paracoccus denitrificans investigated by continuum electrostatic calculations	scientific article published on October 2005

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from paracoccus denitrificans investigated by continuum electrostatic calculations (English)

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

Paracoccus denitrificans

0 references

2

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

3

object named as

Hartmut Michel

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

author name string

Elena Olkhova

1

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

language of work or name

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publication date

1 October 2005

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Europe PubMed Central

PMC publication ID

18 October 2017

Biophysical Journal

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Europe PubMed Central

PMC publication ID

18 October 2017

89

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

4

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

2324-2331

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366733

26 October 2017

Structural elements involved in electron-coupled proton transfer in cytochrome c oxidase

1 reference

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26 October 2017

Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations

1 reference

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The role of electrostatics in proton-conducting membrane protein complexes

1 reference

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The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

1 reference

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The ionization state and the conformation of Glu-71 in the KcsA K(+) channel

1 reference

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What are the dielectric "constants" of proteins and how to validate electrostatic models?

1 reference

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Proton pumping by cytochrome oxidase: progress, problems and postulates

1 reference

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A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins.

1 reference

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The mechanism of proton pumping by cytochrome c oxidasex127e [comments]

1 reference

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26 October 2017

The coupling of electron transfer and proton translocation: electrostatic calculations on Paracoccus denitrificans cytochrome c oxidase

1 reference

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26 October 2017

Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody F V fragment

1 reference

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Glutamic acid 286 in subunit I of cytochrome bo3 is involved in proton translocation

1 reference

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VMD: visual molecular dynamics

1 reference

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The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A

1 reference

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Prediction of pH-dependent properties of proteins

1 reference

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Possible proton relay pathways in cytochrome c oxidase

1 reference

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26 October 2017

Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans

1 reference

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pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

1 reference

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Proton pump coupled to cytochrome c oxidase in mitochondria

1 reference

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26 October 2017

Proton uptake and release in cytochrome c oxidase: separate pathways in time and space?

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29 May 2018

pKa calculations for class A beta-lactamases: methodological and mechanistic implications

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On the calculation of electrostatic interactions in proteins.

1 reference

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29 May 2018

Proton transfer in cytochrome bo3 ubiquinol oxidase of Escherichia coli: second-site mutations in subunit I that restore proton pumping in the mutant Asp135-->Asn.

1 reference

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DFT/electrostatic calculations of pK(a) values in cytochrome c oxidase

1 reference

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17 August 2018

Simulating redox coupled proton transfer in cytochrome c oxidase: looking for the proton bottleneck.

1 reference

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17 August 2018

Tyrosine 167: the origin of the radical species observed in the reaction of cytochrome c oxidase with hydrogen peroxide in Paracoccus denitrificans.

1 reference

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Electrostatic study of the proton pumping mechanism in bovine heart cytochrome C oxidase

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17 August 2018

Water-gated mechanism of proton translocation by cytochrome c oxidase

1 reference

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Computer simulation of water in cytochrome c oxidase

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A mutation in subunit I of cytochrome oxidase from Rhodobacter sphaeroides results in an increase in steady-state activity but completely eliminates proton pumping

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The determinants of pKas in proteins

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17 August 2018

Substitution of asparagine for aspartate-135 in subunit I of the cytochrome bo ubiquinol oxidase of Escherichia coli eliminates proton-pumping activity.

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17 August 2018

Polar residues in helix VIII of subunit I of cytochrome c oxidase influence the activity and the structure of the active site

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On the calculation of pKas in proteins

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Glutamate-89 in subunit II of cytochrome bo3 from Escherichia coli is required for the function of the heme-copper oxidase

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Bound water in the proton translocation mechanism of the haem-copper oxidases

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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https://opencitations.net/index/coci/api/v1/references/10.1529/BIOPHYSJ.105.062091

Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

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11 October 2022

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Identifiers

10.1529/BIOPHYSJ.105.062091

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 October 2017

ResearchGate publication ID

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