Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. (Q41888953)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22593555%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis (English)

1 reference

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1 February 2020

1 reference

1 reference

José Luis Gómez-Skarmeta

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1 February 2020

1 reference

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Elisa de la Calle-Mustienes

1 February 2020

1 reference

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1 February 2020

Simon J van Heeringen

1 reference

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1 February 2020

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1 February 2020

Ozren Bogdanovic

1 reference

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1 February 2020

Ana Fernandez-Miñán

1 reference

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1 February 2020

Carmen Hidalgo

1 reference

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1 February 2020

Ila van Kruysbergen

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1 February 2020

publication date

16 May 2012

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1 February 2020

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1 February 2020

volume

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1 February 2020

issue

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1 February 2020

page(s)

2043-2053

1 reference

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Nanog-like regulates endoderm formation through the Mxtx2-Nodal pathway.

1 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.

5 June 2018

1 reference

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H3K4 tri-methylation provides an epigenetic signature of active enhancers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Fibroblast growth factor homologous factor 13 regulates Na+ channels and conduction velocity in murine hearts

5 June 2018

1 reference

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Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

5 June 2018

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

5 June 2018

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Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

5 June 2018

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Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

5 June 2018

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Enhancer function: new insights into the regulation of tissue-specific gene expression

5 June 2018

1 reference

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seqMINER: an integrated ChIP-seq data interpretation platform

5 June 2018

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A unique chromatin signature uncovers early developmental enhancers in humans

5 June 2018

1 reference

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A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

5 June 2018

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Gene expression divergence recapitulates the developmental hourglass model

5 June 2018

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Genome‐wide maps of transcription regulatory elements

5 June 2018

1 reference

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ChIP-Seq identification of weakly conserved heart enhancers

5 June 2018

1 reference

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Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

5 June 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

5 June 2018

1 reference

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Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

A map of open chromatin in human pancreatic islets

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Histone modifications at human enhancers reflect global cell-type-specific gene expression

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

ChIP-seq accurately predicts tissue-specific activity of enhancers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Model-based analysis of ChIP-Seq (MACS)

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

5 June 2018

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Nanog safeguards pluripotency and mediates germline development

5 June 2018

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A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

5 June 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Zic3 is required for maintenance of pluripotency in embryonic stem cells.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Zebrafish promoter microarrays identify actively transcribed embryonic genes.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

The Zebrafish Information Network: the zebrafish model organism database

5 June 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

5 June 2018

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Heterozygous deletion of the linked genes ZIC1 and ZIC4 is involved in Dandy-Walker malformation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Identification and functional analysis of ZIC3 mutations in heterotaxy and related congenital heart defects

5 June 2018

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

5 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Active genes are tri-methylated at K4 of histone H3

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Stages of embryonic development of the zebrafish

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Transcriptional activation: a complex puzzle with few easy pieces

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Fibroblast growth factor 13 is essential for neural differentiation in Xenopus early embryonic development

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Insights into the evolutionary history of the vertebrate zic3 locus from a teleost-specific zic6 gene in the zebrafish, Danio rerio.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Zic3 is critical for early embryonic patterning during gastrulation

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element

18 August 2018

1 reference

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Conserved and acquired features of neurogenin1 regulation.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3460198

Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis ofcis-regulatory regions in zebrafish

18 August 2018

1 reference

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Whole-mount in situ hybridizations on zebrafish embryos using a mixture of digoxigenin- and fluorescein-labelled probes

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22593555

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.134833.111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22593555%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22593555%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

22593555

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22593555%20AND%20SRC:MED&resulttype=core&format=json