EMdeCODE: a novel algorithm capable of reading words of epigenetic code to predict enhancers and retroviral integration sites and to identify H3R2me1 as a distinctive mark of coding versus non-coding genes (Q41854542)

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scientific article published on 11 December 2012

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English	EMdeCODE: a novel algorithm capable of reading words of epigenetic code to predict enhancers and retroviral integration sites and to identify H3R2me1 as a distinctive mark of coding versus non-coding genes	scientific article published on 11 December 2012

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23234700%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

EMdeCODE: a novel algorithm capable of reading words of epigenetic code to predict enhancers and retroviral integration sites and to identify H3R2me1 as a distinctive mark of coding versus non-coding genes (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23234700%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Federico A Santoni

1

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20 February 2020

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Federico Andrea Santoni

1

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13 October 2017

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11 December 2012

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20 February 2020

Nucleic Acids Research

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20 February 2020

41

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20 February 2020

3

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20 February 2020

e48

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20 February 2020

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Creative Commons Attribution-NonCommercial 3.0 Unported

12 May 2017

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

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Modular regulatory principles of large non-coding RNAs

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Picking ChIP-seq peak detectors for analyzing chromatin modification experiments

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Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance

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Deciphering the code for retroviral integration target site selection

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

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c-Myc regulates transcriptional pause release

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Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.

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Computation for ChIP-seq and RNA-seq studies

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Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

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5 June 2018

Histone modifications at human enhancers reflect global cell-type-specific gene expression

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Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2.

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5 June 2018

ChIP-seq accurately predicts tissue-specific activity of enhancers

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5 June 2018

Prediction of regulatory elements in mammalian genomes using chromatin signatures.

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ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

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5 June 2018

F-Seq: a feature density estimator for high-throughput sequence tags

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5 June 2018

Combinatorial patterns of histone acetylations and methylations in the human genome

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

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Trithorax-group protein ASH1 methylates histone H3 lysine 36.

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

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Defining an epigenetic code

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18 August 2018

Identifiers

10.1093/NAR/GKS1214

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20 February 2020

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Europe PubMed Central

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20 February 2020

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Europe PubMed Central

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20 February 2020

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