RNIE: genome-wide prediction of bacterial intrinsic terminators (Q41817844)

12 October 2017

RNIE: genome-wide prediction of bacterial intrinsic terminators (English)

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12 October 2017

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12 October 2017

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12 October 2017

Zasha Weinberg

0 references

Lars Barquist

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Eric P Nawrocki

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12 October 2017

7 April 2011

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12 October 2017

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Nucleic Acids Research

1 reference

12 October 2017

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12 October 2017

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12 October 2017

5845-5852

1 reference

PMC publication ID

3152330

Creative Commons Attribution-NonCommercial 2.5 Generic

12 October 2017

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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6 June 2018

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6 June 2018

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Improvements to services at the European Nucleotide Archive

6 June 2018

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6 June 2018

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A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

6 June 2018

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Infernal 1.0: inference of RNA alignments

6 June 2018

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Local RNA structure alignment with incomplete sequence

6 June 2018

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The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair

6 June 2018

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Rfam: updates to the RNA families database

6 June 2018

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WAR: Webserver for aligning structural RNAs

6 June 2018

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Biocomputational prediction of small non-coding RNAs in Streptomyces

6 June 2018

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6 June 2018

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Query-dependent banding (QDB) for faster RNA similarity searches

6 June 2018

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Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

6 June 2018

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Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2

6 June 2018

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CMfinder--a covariance model based RNA motif finding algorithm

6 June 2018

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Sequence-based heuristics for faster annotation of non-coding RNA families.

6 June 2018

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Prediction of transcriptional terminators in Bacillus subtilis and related species

6 June 2018

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RALEE--RNA ALignment editor in Emacs

6 June 2018

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Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy

6 June 2018

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A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

6 June 2018

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Conserved economics of transcription termination in eubacteria

6 June 2018

1 reference

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Prediction of rho-independent transcriptional terminators in Escherichia coli

6 June 2018

1 reference

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

6 June 2018

1 reference

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Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination

6 June 2018

1 reference

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Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC

6 June 2018

1 reference

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Identification of a putative Bacillus subtilis rho gene

6 June 2018

1 reference

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RNA sequence analysis using covariance models

6 June 2018

1 reference

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Stochastic context-free grammars for tRNA modeling

6 June 2018

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Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

6 June 2018

1 reference

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Occurrence, divergence and evolution of intrinsic terminators across eubacteria

6 June 2018

1 reference

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Genome-wide analysis of the intrinsic terminators of transcription across the genus Mycobacterium

18 August 2018

1 reference

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Rnall: an efficient algorithm for predicting RNA local secondary structural landscape in genomes.

18 August 2018

1 reference

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Alternate paradigm for intrinsic transcription termination in eubacteria.

18 August 2018

1 reference

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Transcription attenuation in bacteria: theme and variations

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21478170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conserved regulatory motifs in bacteria: riboswitches and beyond

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21478170

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR168

1 reference

12 October 2017

1 reference

PMC publication ID

3152330

12 October 2017

PubMed publication ID

21478170

1 reference

PMC publication ID

3152330