Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR. (Q41608328)

5 October 2017

title

Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR. (English)

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5 October 2017

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Gili Abramov

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5 October 2017

Amir Goldbourt

series ordinal

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5 October 2017

publication date

30 May 2014

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Journal of Biomolecular NMR

5 October 2017

published in

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5 October 2017

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5 October 2017

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5 October 2017

page(s)

219-230

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Magic-angle spinning NMR of a class I filamentous bacteriophage virus

5 October 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Automated and assisted RNA resonance assignment using NMR chemical shift statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Maturation of phage T7 involves structural modification of both shell and inner core components

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Protein-RNA interfaces probed by 1H-detected MAS solid-state NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Database proton NMR chemical shifts for RNA signal assignment and validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Entropy, energy, and bending of DNA in viral capsids

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

PREDITOR: a web server for predicting protein torsion angle restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Condensed genome structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Hydrogen-bonding effects and 13 of the DNA double helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Encapsidated Conformation of Bacteriophage T7 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

A second symmetry mismatch at the portal vertex of bacteriophage T7: 8-fold symmetry in the procapsid core

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Structure of oxidatively damaged nucleic acid adducts. 3. Tautomerism, ionization and protonation of 8-hydroxyadenosine studied by15N NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Structural Characterization of the Bacteriophage T7 Tail Machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Large Terminase Conformational Change Induced by Connector Binding in Bacteriophage T7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

DNA packing in filamentous bacteriophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Solid-state NMR spectroscopy applied to membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Dependence of the Raman signature of genomic B-DNA on nucleotide base sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Assignment methodology for larger RNA oligonucleotides: application to an ATP-binding RNA aptamer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Dependence of 13C NMR chemical shifts on conformations of rna nucleosides and nucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

NMR with (13)C, (15)N-doubly-labeled DNA: The shape Antennapedia homeodomain complex with a 14-mer DNA duplex

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Experiments for correlating quaternary carbons in RNA bases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Chemical shifts in nucleic acids studied by density functional theory calculations and comparison with experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

21 January 2018

NMR spectroscopy of RNA.

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Magic angle spinning NMR reveals sequence-dependent structural plasticity, dynamics, and the spacer peptide 1 conformation in HIV-1 capsid protein assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

A semi-micromethod for the determination of the extinction coefficients of duplex and single-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Molecular Rearrangements Involved in the Capsid Shell Maturation of Bacteriophage T7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Use of chemical shifts for structural studies of nucleic acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Identification of NH...N hydrogen bonds by magic angle spinning solid state NMR in a double-stranded RNA associated with myotonic dystrophy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

An asymmetric dimer as the basic subunit in Alzheimer's disease amyloid β fibrils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

13C chemical shift tensors in hypoxanthine and 6-mercaptopurine: effects of substitution, tautomerism, and intermolecular interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Complete chemical shift assignment of the ssDNA in the filamentous bacteriophage fd reports on its conformation and on its interface with the capsid shell

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Chemical shift referencing in MAS solid state NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Diluting abundant spins by isotope edited radio frequency field assisted diffusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Conformational signatures of 13C chemical shifts in RNA ribose

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Conformation and interactions of the packaged double-stranded DNA genome of bacteriophage T7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

NMR scalar couplings across Watson-Crick base pair hydrogen bonds in DNA observed by transverse relaxation-optimized spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

A simple and general method for determining the protein and nucleic acid content of viruses by UV absorbance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Homonuclear chemical shift correlation in rotating solids via RNnu n symmetry-based adiabatic RF pulse schemes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Calculation of 13C chemical shifts in rna nucleosides: structure-13C chemical shift relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Determination of the DNA sugar pucker using 13C NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Chemical shifts for the unusual DNA structure in Pf1 bacteriophage from dynamic-nuclear-polarization-enhanced solid-state NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

De novo protein structure generation from incomplete chemical shift assignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Advanced solid-state NMR approaches for structure determination of membrane proteins and amyloid fibrils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

DNA-protein interactions as the source of large-length-scale chirality evident in the liquid crystal behavior of filamentous bacteriophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

SPINEVOLUTION: a powerful tool for the simulation of solid and liquid state NMR experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

REDOR NMR characterization of DNA packaging in bacteriophage T4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Filamentous phage studied by magic-angle spinning NMR: resonance assignment and secondary structure of the coat protein in Pf1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

High-Resolution Studies of Uniformly 13C,15N-Labeled RNA by Solid-State NMR Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

Carbon-13 NMR of the bases of three DNA oligonucleotide duplexes: assignment methods and structural features

21 January 2018

2 references

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

21 January 2018

12 December 2020

Intermolecular protein-RNA interactions revealed by 2D 31P-15N magic angle spinning solid-state NMR spectroscopy

1 reference

https://api.crossref.org/works/10.1007%2FS10858-014-9840-4

13C-Detection in RNA Bases: Revealing Structure−Chemical Shift Relationships

21 January 2018

1 reference

12 December 2020

Influence of the glycosidic torsion angle on 13C and 15N shifts in guanosine nucleotides: Investigations of G-tetrad models with alternating syn and anti bases

1 reference

12 December 2020

Structure of the chemokine receptor CXCR1 in phospholipid bilayers

1 reference

12 December 2020

A suite of solid-state NMR experiments for RNA intranucleotide resonance assignment in a 21 kDa protein-RNA complex

1 reference

12 December 2020

Resolution enhanced homonuclear carbon decoupled triple resonance experiments for unambiguous RNA structural characterization

1 reference

12 December 2020

TEDOR with adiabatic inversion pulses: Resonance assignments of 13C/15N labelled RNAs

1 reference

12 December 2020

Atomic model of the type III secretion system needle

1 reference

12 December 2020

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings

1 reference

12 December 2020

UV-induced small structural changes in the T7 bacteriophage studied by melting methods

1 reference

12 December 2020

The ultraviolet absorption spectra of proteins

1 reference

12 December 2020

New NMR experiments for RNA nucleobase resonance assignment and chemical shift analysis of an RNA UUCG tetraloop

1 reference

12 December 2020

The genetics and physiology of bacteriophage T7

1 reference

12 December 2020

10.1007/S10858-014-9840-4

Identifiers

DOI

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Dimensions Publication ID

5 October 2017

1007517946

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