Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms (Q41597733)

From Wikidata

Jump to navigation Jump to search

scientific article published on 15 October 2008

Language	Label	Description	Also known as
English	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms	scientific article published on 15 October 2008

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms (English)

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Gert-Jan van Ommen

8

object named as

Gert-Jan B van Ommen

0 references

Helene Thygesen

3

object named as

Helene H Thygesen

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

author name string

Peter A C 't Hoen

1

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Yavuz Ariyurek

2

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Erno Vreugdenhil

4

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Rolf H A M Vossen

5

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Renée X de Menezes

6

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Judith M Boer

7

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Johan T den Dunnen

9

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

language of work or name

0 references

publication date

15 October 2008

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

36

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

21

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

e141

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Stem cell transcriptome profiling via massive-scale mRNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

The transcriptional landscape of the yeast genome defined by RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Can subtle changes in gene expression be consistently detected with different microarray platforms?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Gene expression profiling by massively parallel sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Whole-genome re-sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Sequence biases in large scale gene expression profiling data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Modeling Sage data with a truncated gamma-Poisson model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Genetic interactions between doublecortin and doublecortin-like kinase in neuronal migration and axon outgrowth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Antisense transcription in the mammalian transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Accurate multiplex polony sequencing of an evolved bacterial genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Tag-based approaches for transcriptome research and genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

A global test for groups of genes: testing association with a clinical outcome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Widespread occurrence of antisense transcription in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Catalytic and regulatory domains of doublecortin kinase-1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Statistical evaluation of SAGE libraries: consequences for experimental design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Evaluation of Affymetrix Gene Chip sensitivity in rat hippocampal tissue using SAGE analysis. Serial Analysis of Gene Expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

DCAMKL1 encodes a protein kinase with homology to doublecortin that regulates microtubule polymerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Patterns of variant polyadenylation signal usage in human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

6 June 2018

Expression profiling of antisense transcripts on DNA arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Evaluation of DNA microarray results with quantitative gene expression platforms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

A large quantity of novel human antisense transcripts detected by LongSAGE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Functional differences between two DCLK splice variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

GeneChip analysis of hippocampal gene expression profiles of short- and long-attack-latency mice: technical and biological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Large-scale gene expression profiling of discrete brain regions: potential, limitations, and application in genetics of aggressive behavior.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

[The context organization of functional regions in yeast genes with high-level expression]

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Analysis of human transcriptomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588528

19 August 2018

Multiple-laboratory comparison of microarray platforms

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN705

21 January 2018

Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18927111

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKN705

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

release_b4zf5k2ifbcftbwzahj63b3tp4

1 reference

https://api.fatcat.wiki/v0/release/b4zf5k2ifbcftbwzahj63b3tp4

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q41597733&oldid=1924839015"