Mango: a bias-correcting ChIA-PET analysis pipeline (Q40879288)

24 September 2017

Mango: a bias-correcting ChIA-PET analysis pipeline (English)

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24 September 2017

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Alan P Boyle

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Douglas H Phanstiel

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24 September 2017

Nastaran Heidari

series ordinal

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24 September 2017

Michael P Snyder

series ordinal

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24 September 2017

language of work or name

English

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publication date

1 June 2015

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24 September 2017

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24 September 2017

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24 September 2017

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24 September 2017

3092-3098

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describes a project that uses

24 September 2017

Bayes' theorem

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18 June 2022

https://europepmc.org/article/PMC/4592333

based on heuristic

inferred from PubMed Central ID database lookup

cites work

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

A Bayesian mixture model for chromatin interaction data

24 September 2017

1 reference

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Genome-wide map of regulatory interactions in the human genome

24 September 2017

1 reference

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A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions

24 September 2017

1 reference

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Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

The long-range interaction landscape of gene promoters

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

An integrated encyclopedia of DNA elements in the human genome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

Topological domains in mammalian genomes identified by analysis of chromatin interactions

24 September 2017

1 reference

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

A three-dimensional model of the yeast genome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

The transcriptional interactome: gene expression in 3D.

24 September 2017

1 reference

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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

24 September 2017

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

24 September 2017

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

24 September 2017

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

24 September 2017

1 reference

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Chromosome crosstalk in three dimensions.

24 September 2017

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

24 September 2017

1 reference

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Model-based analysis of ChIP-Seq (MACS)

24 September 2017

1 reference

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

24 September 2017

1 reference

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

Capturing chromosome conformation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4592333

10.1093/BIOINFORMATICS/BTV336

24 September 2017

Identifiers

DOI

1 reference

journals/bioinformatics/PhanstielBHS15

24 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

24 September 2017

PubMed publication ID

26034063

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