Architectural elements in nucleoprotein complexes: interchangeability of specific and non-specific DNA binding proteins. (Q40793341)

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28 October 2019

title

Architectural elements in nucleoprotein complexes: interchangeability of specific and non-specific DNA binding proteins (English)

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28 October 2019

Segall AM

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28 October 2019

Goodman SD

series ordinal

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28 October 2019

Nash HA

series ordinal

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28 October 2019

language of work or name

English

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publication date

1 October 1994

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28 October 2019

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28 October 2019

volume

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28 October 2019

issue

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28 October 2019

page(s)

4536-4548

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Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU.

28 October 2019

cites work

1 reference

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Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure.

24 September 2017

1 reference

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Structure of the HMG box motif in the B-domain of HMG1

24 September 2017

1 reference

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High-mobility-group 1 protein mediates DNA bending as determined by ring closures

24 September 2017

1 reference

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Solution structure of a DNA-binding domain from HMG1.

24 September 2017

1 reference

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The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures

24 September 2017

1 reference

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The chromatin-associated protein H-NS alters DNA topology in vitro

24 September 2017

1 reference

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Characterization of a set of integration host factor mutants deficient for DNA binding

24 September 2017

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Synaptic intermediates in bacteriophage lambda site-specific recombination: integrase can align pairs of attachment sites.

24 September 2017

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Growth phase variation of integration host factor level in Escherichia coli

24 September 2017

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HMG domain proteins: architectural elements in the assembly of nucleoprotein structures

24 September 2017

1 reference

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DNA chaperones: a solution to a persistence problem?

24 September 2017

1 reference

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A signature for the HMG-1 box DNA-binding proteins

24 September 2017

1 reference

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The locus of sequence-directed and protein-induced DNA bending

24 September 2017

1 reference

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

24 September 2017

1 reference

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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

24 September 2017

1 reference

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Patterns of lambda Int recognition in the regions of strand exchange

24 September 2017

1 reference

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Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sites

24 September 2017

1 reference

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Action at a distance along a DNA.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Histonelike proteins of bacteria

24 September 2017

1 reference

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Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Integration host factor: a protein for all reasons.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

A protein factor which reduces the negative supercoiling requirement in the Mu DNA strand transfer reaction is Escherichia coli integration host factor.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Heteroduplex substrates for bacteriophage lambda site-specific recombination: cleavage and strand transfer products

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Transcriptional activation of bacteriophage lambda DNA replication in vitro: regulatory role of histone-like protein HU of Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Bending and supercoiling of DNA at the attachment site of bacteriophage lambda

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

More than just "histone-like" proteins

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

HU and integration host factor function as auxiliary proteins in cleavage of phage lambda cohesive ends by terminase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Strand separation required for initiation of replication at the chromosomal origin of E.coli is facilitated by a distant RNA-DNA hybrid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Sequence-specific interaction of the HMG box proteins TCF-1 and SRY occurs within the minor groove of a Watson-Crick double helix

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Specific binding of chromosomal protein HMG1 to DNA damaged by the anticancer drug cisplatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Periodic binding of individual core histones to DNA: inadvertent purification of the core histone H2B as a putative enhancer-binding factor

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Deformation of DNA during site-specific recombination of bacteriophage lambda: replacement of IHF protein by HU protein or sequence-directed bends

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

HU, the major histone-like protein of E. coli, modulates the binding of IHF to oriC

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Isolation and characterization of human cDNA clones encoding a high mobility group box protein that recognizes structural distortions to DNA caused by binding of the anticancer agent cisplatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

The interaction of recombination proteins with supercoiled DNA: defining the role of supercoiling in lambda integrative recombination

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complex

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Control of directionality in lambda site specific recombination

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Specific recognition of cruciform DNA by nuclear protein HMG1.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Tn10 transposition and circle formation in vitro.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Maintenance of plasmids in HU and IHF mutants of Escherichia coli.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Immunoelectron microscopic analysis of the A, B, and HU protein content of bacteriophage Mu transpososomes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in lambda attL.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

17 June 2018

1 reference

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The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures

17 June 2018

1 reference

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Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Mapping the functional domains of bacteriophage lambda integrase protein

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Construction and characterization of the deletion mutant of hupA and hupB genes in Escherichia coli

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

The interaction of E. coli IHF protein with its specific binding sites.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Functional replacement of a protein-induced bend in a DNA recombination site

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=395386

Role of the Xis protein of bacteriophage λ in a specific reactive complex at the attR prophage attachment site

19 August 2018

1 reference

12 December 2020

Sequence and spacing requirements of a retrovirus integration site

1 reference

12 December 2020

DNA ring closure mediated by protein HU

1 reference

12 December 2020

Requirement of integration host factor (IHF) for growth of Escherichia coli deficient in HU protein

1 reference

12 December 2020

HMG has DNA wrapped up

1 reference

12 December 2020

Protein HU binds specifically to kinked DNA

1 reference

12 December 2020

Site-specific HU binding in the Mu transpososome: conversion of a sequence-independent DNA-binding protein into a chemical nuclease

1 reference

12 December 2020

10.1002/J.1460-2075.1994.TB06775.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7925295%20AND%20SRC:MED&resulttype=core&format=json

28 October 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7925295%20AND%20SRC:MED&resulttype=core&format=json

28 October 2019

PubMed publication ID

7925295

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:7925295%20AND%20SRC:MED&resulttype=core&format=json