The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis. (Q40565888)

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scientific article published on March 1987

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English	The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis.	scientific article published on March 1987

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

title

The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

main subject

Escherichia coli

0 references

Markov chain

0 references

author

Jonathan Arnold

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

author name string

G J Phillips

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

R Ivarie

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

publication date

1 March 1987

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stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

number of pages

12

1 reference

based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

volume

15

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

issue

6

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

page(s)

2627-2638

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stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

cites work

Codon catalog usage is a genome strategy modulated for gene expressivity

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

Strong doublet preferences in nucleotide sequences and DNA geometry

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

Propagation of some human DNA sequences in bacteriophage lambda vectors requires mutant Escherichia coli hosts

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

22 September 2017

The universal dinucleotide asymmetry rules in DNA and the amino acid codon choice

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

15 June 2018

Contextual constraints on synonymous codon choice

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

15 June 2018

Sense codons are found in specific contexts.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

15 June 2018

Viability of λ phages carrying a perfect palindrome in the absence of recombination nucleases

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

20 August 2018

Unusual frequencies of certain alternating purine-pyrimidine runs in natural DNA sequences: relation to Z-DNA.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=340673

retrieved

20 August 2018

Molecular evolution of bacteriophages: evidence of selection against the recognition sites of host restriction enzymes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/3550700

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/3550700

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/3550700

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection pressures on codon usage in the complete genome of bacteriophage T7

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/3550700

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection againstdam methylation sites in the genomes of DNA of enterobacteriophages

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/3550700

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/15.6.2627

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

PMC publication ID

340673

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

PubMed publication ID

3550700

1 reference

stated in

Europe PubMed Central

PMC publication ID

340673

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3550700%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 September 2019

ResearchGate publication ID

31471827

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