Complex structural behavior of oligopurine-oligopyrimidine sequence cloned within the supercoiled plasmid. (Q40520774)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2644622%20AND%20SRC:MED&resulttype=core&format=json

2 October 2019

title

Complex structural behavior of oligopurine-oligopyrimidine sequence cloned within the supercoiled plasmid (English)

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2 October 2019

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2 October 2019

P Parniewski

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2 October 2019

A Wilk

series ordinal

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2 October 2019

J Klysik

series ordinal

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2 October 2019

publication date

1 January 1989

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2 October 2019

published in

Nucleic Acids Research

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2 October 2019

volume

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2 October 2019

issue

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2 October 2019

page(s)

617-629

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Structure of two human beta-actin-related processed genes one of which is located next to a simple repetitive sequence.

2 October 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Poly(pyrimidine) . poly(purine) synthetic DNAs containing 5-methylcytosine form stable triplexes at neutral pH

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

57 Sequencing end-labeled DNA with base-specific chemical cleavages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

A chicken repetitive DNA sequence that is highly sensitive to single-strand specific endonucleases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Human U1 RNA genes contain an unusually sensitive nuclease S1 cleavage site within the conserved 3' flanking region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

S1-hypersensitive sites in eukaryotic promoter regions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Intramolecular DNA triplexes in supercoiled plasmids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Structural interconversion of alternating purine-pyrimidine inverted repeats cloned in supercoiled plasmids.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

22 September 2017

Unusual DNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Eukaryotic DNA diverges at a long and complex pyrimidine.purine tract that can adopt altered conformations.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

An unusually long poly(purine)-poly(pyrimidine) sequence is located upstream from the human thyroglobulin gene

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

A rapid alkaline extraction procedure for screening recombinant plasmid DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Unique structures formed by pyrimidine-purine DNAs which may be four-stranded

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Complexes formed by (pyrimidine)n·(purine)nDNAs on lowering the pH are three-stranded

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

DNA H form requires a homopurine-homopyrimidine mirror repeat.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Association of an S1 nuclease-sensitive structure with short direct repeats 5' of Drosophila heat shock genes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Homocopolymer sequences in the spacer of a sea urchin histone gene repeat are sensitive to S1 nuclease

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Structures of homopurine-homopyrimidine tract in superhelical DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

The segment inversion site of herpes simplex virus type 1 adopts a novel DNA structure

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

DNA sequences mediating class switching in alpha-immunoglobulins

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Conformation of promoter DNA: Fine mapping of S1-hypersensitive sites

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=331607

Influence of DNA sequence on the formation of non-B right-handed helices in oligopurine.oligopyrimidine inserts in plasmids

20 August 2018

1 reference

12 December 2020

Non-B right-handed DNA conformations of homopurine.homopyrimidine sequences in the murine immunoglobulin C alpha switch region

1 reference

12 December 2020

Chemical probing of homopurine-homopyrimidine mirror repeats in supercoiled DNA

1 reference

12 December 2020

Chemical probing of the homopurine.homopyrimidine tract in supercoiled DNA at single-nucleotide resolution

1 reference

12 December 2020

Single strands, triple strands, and kinks in H-DNA

1 reference

12 December 2020

The S1-sensitive form of d(C-T)n.d(A-G)n: chemical evidence for a three-stranded structure in plasmids

1 reference

12 December 2020

A pH-dependent structural transition in the homopurine-homopyrimidine tract in superhelical DNA

1 reference

12 December 2020

Structure of (dG)n.(dC)n under superhelical stress and acid pH

1 reference

12 December 2020

The facile generation of covalently closed, circular DNAs with defined negative superhelical densities

1 reference

12 December 2020

A sequence conserved in both the chicken and mouse alpha 2(I) collagen promoter contains sites sensitive to S1 nuclease

1 reference

12 December 2020

A structural basis for S1 nuclease sensitivity of double-stranded DNA

1 reference

12 December 2020

Unusual DNA structures in the adenovirus genome

1 reference

12 December 2020

Sequence-dependent S1 nuclease hypersensitivity of a heteronomous DNA duplex

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/17.2.617

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2644622%20AND%20SRC:MED&resulttype=core&format=json

2 October 2019

1 reference

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2 October 2019

PubMed publication ID

2644622

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2644622%20AND%20SRC:MED&resulttype=core&format=json