Monte Carlo simulations of beta-hairpin folding at constant temperature (Q40222852)

18 September 2017

Monte Carlo simulations of beta-hairpin folding at constant temperature (English)

1 reference

18 September 2017

Sung SS

1 reference

PMC publication ID

1302508

18 September 2017

language of work or name

English

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publication date

1 January 1999

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18 September 2017

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inferred from page(s)

published in

Biophysical Journal

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18 September 2017

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18 September 2017

1 Pt 1

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18 September 2017

164-175

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Helix folding simulations with various initial conformations

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Folding simulations of alanine-based peptides with lysine residues

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Principles of protein folding--a perspective from simple exact models.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Free energy determinants of secondary structure formation: I. alpha-Helices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

The interpretation of protein structures: Estimation of static accessibility

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Theory for the folding and stability of globular proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Solvation energy in protein folding and binding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Spin glasses and the statistical mechanics of protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Excluded volume approximation to protein-solvent interaction. The solvent contact model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Influence of point mutations on protein structure: probability of a neutral mutation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Prediction of the thermodynamics of protein unfolding: the helix-coil transition of poly(L-alanine).

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Molecular dynamics simulations of small peptides: dependence on dielectric model and pH.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Optimal protein-folding codes from spin-glass theory

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Design of a 20-amino acid, three-stranded beta-sheet protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Hydrophobic bonding and accessible surface area in proteins

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Structural and functional role of leucine residues in proteins

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

On the multiple-minima problem in the conformational analysis of polypeptides. II. An electrostatically driven Monte Carlo method--tests on poly(L-alanine).

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Alpha-helix folding by Monte Carlo simulated annealing in isolated C-peptide of ribonuclease A.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Molecular dynamics simulations of helix denaturation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Simulations of the folding of a globular protein

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Reversible peptide folding in solution by molecular dynamics simulation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Hydrophobic potential by pairwise surface area sum.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302508

Interactions Responsible for the pH Dependence of the beta-Hairpin Conformational Population Formed by a Designed Linear Peptide

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

Turn Residue Sequence Determines β-Hairpin Conformation in Designed Peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

Van der waals picture of liquids, solids, and phase transformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

Can protein unfolding simulate protein folding?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

The inclusion of electrostatic hydration energies in molecular mechanics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

De novo design and structural analysis of a model beta-hairpin peptide system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

Molecular dynamics simulations of synthetic peptide folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977186-9

10.1016/S0006-3495(99)77186-9

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

PMC publication ID

1302508

18 September 2017

PubMed publication ID

9876131

1 reference

PMC publication ID

1302508