Addition of missing loops and domains to protein models by x-ray solution scattering (Q40218662)

18 September 2017

Addition of missing loops and domains to protein models by x-ray solution scattering (English)

1 reference

18 September 2017

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18 September 2017

1 reference

18 September 2017

Nigel A J Eady

1 reference

18 September 2017

Katherine A Brown

series ordinal

1 reference

18 September 2017

language of work or name

English

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publication date

1 December 2002

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18 September 2017

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18 September 2017

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18 September 2017

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18 September 2017

3113-3125

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Optimization by Simulated Annealing

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Protein structure prediction constrained by solution X-ray scattering data and structural homology identification.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Determination of domain structure of proteins from X-ray solution scattering

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Modeling zymogen protein C.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Protein production: feeding the crystallographers and NMR spectroscopists

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Structure of the fibrinogen γ-chain integrin binding and factor XIIIa cross-linking sites obtained through carrier protein driven crystallization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

The crystal structure of the minus-end-directed microtubule motor protein ncd reveals variable dimer conformations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

JPred: a consensus secondary structure prediction server

22 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

22 September 2017

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

A model of the quaternary structure of the Escherichia coli F1 ATPase from X-ray solution scattering and evidence for structural changes in the delta subunit during ATP hydrolysis

7 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Structure of the ankyrin-binding domain of alpha-Na,K-ATPase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Protein hydration in solution: experimental observation by x-ray and neutron scattering

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

The structure of the acto-myosin subfragment 1 complex: Results of searches using data from electron microscopy and x-ray crystallography

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

An iterative method for extracting energy-like quantities from protein structures.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Crystal structure of reduced protein R2 of ribonucleotide reductase: the structural basis for oxygen activation at a dinuclear iron site

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Crystal structures of a schistosomal drug and vaccine target: glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Global Fold Determination from a Small Number of Distance Restraints

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Three-dimensional structure of Schistosoma japonicum glutathione S-transferase fused with a six-amino acid conserved neutralizing epitope of gp41 from HIV

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Real-space refinement of the structure of hen egg-white lysozyme

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

The three-dimensional structure of a glutathione S-transferase from the mu gene class. Structural analysis of the binary complex of isoenzyme 3-3 and glutathione at 2.2-A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

A simplified representation of protein conformations for rapid simulation of protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

The Protein Data Bank: a computer-based archival file for macromolecular structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Conformation of the Drosophila motor protein non-claret disjunctional in solution from X-ray and neutron scattering.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Validation of protein models from Cα coordinates alone

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Structures of Calmodulin and a Functional Myosin Light Chain Kinase in the Activated Complex: A Neutron Scattering Study†

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302390

Pentameric and decameric structures in solution of serum amyloid P component by X-ray and neutron scattering and molecular modelling analyses

2 December 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

On 'globbicity' of low-resolution protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Recognizing native folds by the arrangement of hydrophobic and polar residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

A discussion of the solution for the best rotation to relate two sets of vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Automated matching of high- and low-resolution structural models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Generation of β-globin by sequence-specific proteolysis of a hybrid protein produced in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Crystallization of glutathione S-transferase from human placenta

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Biochemical and structural characterization of recombinant copper-metallothionein from Saccharomyces cerevisiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

A Map of Protein-rRNA Distribution in the 70 SEscherichia coliRibosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

CrystalVersusSolution Structures of Thiamine Diphosphate-dependent Enzymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975315-0

Large differences are observed between the crystal and solution quaternary structures of allosteric aspartate transcarbamylase in the R state

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12496082

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(02)75315-0

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

12496082

1 reference