The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors (Q48350384)

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scientific article published on 28 March 2017

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English	The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors	scientific article published on 28 March 2017

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scholarly article

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Europe PubMed Central

PubMed publication ID

10 February 2018

http://europepmc.org/abstract/MED/28351991

The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors (English)

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Europe PubMed Central

PubMed publication ID

10 February 2018

http://europepmc.org/abstract/MED/28351991

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3 June 2020

Joachim Griesenbeck

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3 June 2020

Wojciech Antosz

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3 June 2020

Hans F Ehrnsberger

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Philipp Holzinger

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3 June 2020

Simon A Mortensen

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3 June 2020

Klaus D Grasser

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3 June 2020

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Alexander Pfab

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3 June 2020

Karin Köllen

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3 June 2020

Astrid Bruckmann

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3 June 2020

Thomas Schubert

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3 June 2020

Marion Grasser

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3 June 2020

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28 March 2017

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10 February 2018

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3 June 2020

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3 June 2020

4

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3 June 2020

854-870

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3 June 2020

Cracking the control of RNA polymerase II elongation by 7SK snRNP and P-TEFb

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Plant Elongator-mediated transcriptional control in a chromatin and epigenetic context.

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The SNW Domain of SKIP Is Required for Its Integration into the Spliceosome and Its Interaction with the Paf1 Complex in Arabidopsis.

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Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing

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The reciprocal regulation between splicing and 3'-end processing

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From polyadenylation to splicing: Dual role for mRNA 3' end formation factors

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The zinc-finger protein SPT4 interacts with SPT5L/KTF1 and modulates transcriptional silencing in Arabidopsis.

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The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site

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Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I.

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AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex.

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26 August 2018

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

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Histone H2A/H2B chaperones: from molecules to chromatin-based functions in plant growth and development

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Abundance and distribution of RNA polymerase II in Arabidopsis interphase nuclei.

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26 August 2018

Getting up to speed with transcription elongation by RNA polymerase II

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26 August 2018

NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis

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26 August 2018

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes

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26 August 2018

Transcript elongation factors: shaping transcriptomes after transcript initiation

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Antisense-mediated FLC transcriptional repression requires the P-TEFb transcription elongation factor

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26 August 2018

The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis

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26 August 2018

Incorporating DNA shearing in standard affinity purification allows simultaneous identification of both soluble and chromatin-bound interaction partners

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Remodelling chromatin to shape development of plants

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The seed dormancy defect of Arabidopsis mutants lacking the transcript elongation factor TFIIS is caused by reduced expression of the DOG1 gene.

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Purification of specific chromatin domains from single-copy gene loci in Saccharomyces cerevisiae.

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RNA polymerase I structure and transcription regulation

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Emerging roles for RNA polymerase II CTD in Arabidopsis

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Alternative cleavage and polyadenylation: extent, regulation and function

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Arabidopsis DEAD-box RNA helicase UAP56 interacts with both RNA and DNA as well as with mRNA export factors

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Mediator-regulated transcription through the +1 nucleosome

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Structural basis of transcription elongation

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26 August 2018

The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states

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26 August 2018

Plant proteins containing high mobility group box DNA-binding domains modulate different nuclear processes

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26 August 2018

CHD chromatin remodelers and the transcription cycle

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26 August 2018

SPT6L encoding a putative WG/GW-repeat protein regulates apical-basal polarity of embryo in Arabidopsis

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Structural biology of poly(A) site definition

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26 August 2018

The Transcription Elongation Factor Spt5 Influences Transcription by RNA Polymerase I Positively and Negatively

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To cross or not to cross the nucleosome, that is the elongation question...

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26 August 2018

A Tandem SH2 Domain in Transcription Elongation Factor Spt6 Binds the Phosphorylated RNA Polymerase II C-terminal Repeat Domain (CTD)

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Uniform transitions of the general RNA polymerase II transcription complex

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The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin

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Transcript Elongation by RNA Polymerase II.

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PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin.

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NINJA connects the co-repressor TOPLESS to jasmonate signalling

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The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS

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Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

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26 August 2018

The Paf1 complex: platform or player in RNA polymerase II transcription?

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Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.

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The transcript elongation factor FACT affects Arabidopsis vegetative and reproductive development and genetically interacts with HUB1/2.

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Progression through the RNA polymerase II CTD cycle

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"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

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Mechanism of auxin-regulated gene expression in plants

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RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family.

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FACT facilitates chromatin transcription by RNA polymerases I and III

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Transcript elongation factor TFIIS is involved in arabidopsis seed dormancy

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Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II.

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Auxin: the looping star in plant development

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Human SSRP1 has Spt16-dependent and -independent roles in gene transcription.

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Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus

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Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II

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26 August 2018

Drosophila Paf1 modulates chromatin structure at actively transcribed genes.

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26 August 2018

The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription

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26 August 2018

PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.

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26 August 2018

Elongation by RNA polymerase II: the short and long of it

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26 August 2018

FACT facilitates transcription-dependent nucleosome alteration

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26 August 2018

Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins

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26 August 2018

SSRP1 functions as a co-activator of the transcriptional activator p63

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26 August 2018

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

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Specificity of the stimulatory interaction between chromosomal HMGB proteins and the transcription factor Dof2 and its negative regulation by protein kinase CK2-mediated phosphorylation

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26 August 2018

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

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26 August 2018

Cooperative transcriptional activation by serum response factor and the high mobility group protein SSRP1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5435424

26 August 2018

Isolation of three proteins that bind to mammalian RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5435424

26 August 2018

Coimmunoprecipitation (co-IP) of Nuclear Proteins and Chromatin Immunoprecipitation (ChIP) from Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5435424

1 December 2018

A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/28351991

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/28351991

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family

1 reference

https://pubmed.ncbi.nlm.nih.gov/28351991

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/28351991

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/28351991

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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