Global analysis of protein structural changes in complex proteomes (Q48270002)

10 February 2018

title

Global analysis of protein structural changes in complex proteomes (English)

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10 February 2018

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10 February 2018

Ana Paula Oliveira

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Paola Picotti

object named as

Paola Picotti

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10 February 2018

Yuehan Feng

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10 February 2018

Giorgia De Franceschi

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10 February 2018

Martin Soste

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10 February 2018

Andre Melnik

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10 February 2018

Paul J Boersema

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10 February 2018

Patrizia Polverino de Laureto

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10 February 2018

Yaroslav Nikolaev

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10 February 2018

publication date

14 September 2014

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10 February 2018

published in

Nature Biotechnology

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10 February 2018

volume

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10 February 2018

issue

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page(s)

1036-1044

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10 February 2018

Mass spectrometry-based proteomics

cites work

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Targeted large-scale analysis of protein acetylation

21 January 2018

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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

21 January 2018

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Conformational changes associated with protein-protein interactions

21 January 2018

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The role of protein conformational fluctuations in allostery, function, and evolution.

21 January 2018

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Proteus in the world of proteins: conformational changes in protein kinases.

21 January 2018

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Natively unfolded proteins

21 January 2018

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Domain movements in protein kinases

21 January 2018

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Proteins move! Protein dynamics and long-range allostery in cell signaling

21 January 2018

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Protein misfolding, functional amyloid, and human disease

21 January 2018

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Protein structure determination by x-ray crystallography.

21 January 2018

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Spectroscopic methods for analysis of protein secondary structure

21 January 2018

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Measuring protein conformational changes by FRET/LRET.

21 January 2018

1 reference

Protein structure determination in living cells by in-cell NMR spectroscopy

21 January 2018

1 reference

Analysis by limited proteolysis of domain organization and GSH-site arrangement of bacterial glutathione transferase B1-1.

21 January 2018

1 reference

Probing the domain structure and ligand-induced conformational changes by limited proteolysis of tyrocidine synthetase 1.

21 January 2018

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Protein aggregation and amyloid fibril formation by an SH3 domain probed by limited proteolysis

21 January 2018

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Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

21 January 2018

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Molecular insights into the interaction between alpha-synuclein and docosahexaenoic acid

21 January 2018

1 reference

The fold of alpha-synuclein fibrils

21 January 2018

1 reference

A Three-Dimensional Model of the Myoglobin Molecule Obtained by X-Ray Analysis

21 January 2018

1 reference

Is Apomyoglobin a Molten Globule? Structural Characterization by NMR

21 January 2018

1 reference

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

21 January 2018

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Exploring the metabolic and genetic control of gene expression on a genomic scale

21 January 2018

1 reference

Global analysis of protein expression in yeast

21 January 2018

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Structure-based prediction of protein–protein interactions on a genome-wide scale

21 January 2018

1 reference

UniProt: the Universal Protein knowledgebase

21 January 2018

1 reference

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

21 January 2018

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Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation

21 January 2018

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Fructose-1,6-bisphosphate, a regulator of metabolism

21 January 2018

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Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

21 January 2018

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Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

21 January 2018

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Classification and annotation of the relationship between protein structural change and ligand binding.

21 January 2018

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Protein–protein docking benchmark version 4.0

21 January 2018

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Accounting for conformational changes during protein-protein docking

21 January 2018

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Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation.

21 January 2018

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Regulation of yeast central metabolism by enzyme phosphorylation

21 January 2018

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Target identification using drug affinity responsive target stability (DARTS)

21 January 2018

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Structural basis for substrate delivery by acyl carrier protein in the yeast fatty acid synthase

21 January 2018

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Getting started with yeast

21 January 2018

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

Phosphoproteome exploration reveals a reformatting of cellular processes in response to low sterol biosynthetic capacity in Arabidopsis.

21 January 2018

1 reference

A comparative phosphoproteomic analysis of a human tumor metastasis model using a label-free quantitative approach

21 January 2018

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A cross-platform toolkit for mass spectrometry and proteomics

21 January 2018

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 January 2018

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MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

21 January 2018

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A direct approach to false discovery rates

21 January 2018

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Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.

21 January 2018

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Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

21 January 2018

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Inference of macromolecular assemblies from crystalline state

21 January 2018

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21 January 2018

The Protein Data Bank

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ModBase, a database of annotated comparative protein structure models, and associated resources

21 January 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

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Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

21 January 2018

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Epigenetics in the Extreme: Prions and the Inheritance of Environmentally Acquired Traits

21 January 2018

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Actin polymerization and ATP hydrolysis

21 January 2018

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12 December 2020

The C-terminal segment of yeast BMH proteins exhibits different structure compared to other 14-3-3 protein isoforms

1 reference

12 December 2020

Fluorescence techniques for studying protein structure.

1 reference

12 December 2020

Probing protein structure by limited proteolysis.

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12 December 2020

Pyruvate decarboxylase: an indispensable enzyme for growth of Saccharomyces cerevisiae on glucose

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12 December 2020

[18] Quantification of β-sheet amyloid fibril structures with thioflavin T

1 reference

12 December 2020

A protein dissection study of a molten globule

1 reference

12 December 2020

Neuropathology, biochemistry, and biophysics of alpha-synuclein aggregation

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12 December 2020

Cleavage of the haem-protein link by acid methylethylketone

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12 December 2020

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

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12 December 2020

Identifiers

DOI

10.1038/NBT.2999

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10 February 2018

release_xtpg6qsxlzdldowiyzfkeimeyq

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/xtpg6qsxlzdldowiyzfkeimeyq

24 November 2022

mapped directly with Wikidata item

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10 February 2018