Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants (Q48104068)

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English	Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants	scientific article

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Europe PubMed Central

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21 February 2018

http://europepmc.org/abstract/PMC/5800051

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants (English)

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Europe PubMed Central

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21 February 2018

http://europepmc.org/abstract/PMC/5800051

Clémentine Vitte

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1 June 2020

Stéphane Nicolas

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1 June 2020

Peter M Rogowsky

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1 June 2020

Alain Charcosset

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1 June 2020

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1 June 2020

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Aude Darracq

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1 June 2020

Jorge Duarte

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1 June 2020

Jean-Philippe Pichon

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1 June 2020

Tristan Mary-Huard

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1 June 2020

Céline Chevalier

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Aurélie Bérard

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1 June 2020

Marie-Christine Le Paslier

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5 February 2018

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1 June 2020

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1 June 2020

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Exploring structural variants in environmentally sensitive gene families.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Towards plant pangenomics

1 reference

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22 May 2018

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

1 reference

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22 May 2018

Repbase Update, a database of repetitive elements in eukaryotic genomes

1 reference

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22 May 2018

High-resolution genetic mapping of maize pan-genome sequence anchors.

1 reference

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22 May 2018

Second-generation PLINK: rising to the challenge of larger and richer datasets

1 reference

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22 May 2018

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1 reference

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22 May 2018

Structural variations in plant genomes

1 reference

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22 May 2018

DNA recombination in somatic plant cells: mechanisms and evolutionary consequences

1 reference

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22 May 2018

Structural variation and genome complexity: is dispensable really dispensable?

1 reference

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22 May 2018

InterProScan 5: genome-scale protein function classification

1 reference

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22 May 2018

High presence/absence gene variability in defense-related gene clusters of Cucumis melo

1 reference

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22 May 2018

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1 reference

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1 reference

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22 May 2018

Aluminum tolerance in maize is associated with higher MATE1 gene copy number

1 reference

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22 May 2018

YAHA: fast and flexible long-read alignment with optimal breakpoint detection

1 reference

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22 May 2018

Toward almost closed genomes with GapFiller

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22 May 2018

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1 reference

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1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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22 May 2018

FLASH: fast length adjustment of short reads to improve genome assemblies

1 reference

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22 May 2018

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22 May 2018

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1 reference

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22 May 2018

A European perspective on maize history.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Quality control and preprocessing of metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision

1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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22 May 2018

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

1 reference

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22 May 2018

Genome-wide patterns of genetic variation among elite maize inbred lines

1 reference

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22 May 2018

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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22 May 2018

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22 May 2018

The B73 Maize Genome: Complexity, Diversity, and Dynamics

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22 May 2018

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

1 reference

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22 May 2018

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1 reference

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22 May 2018

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

The Sequence Alignment/Map format and SAMtools

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

ABySS: a parallel assembler for short read sequence data

1 reference

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22 May 2018

MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings

1 reference

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22 May 2018

Genome assembly forensics: finding the elusive mis-assembly

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22 May 2018

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1 reference

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22 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Numbers and Distribution of Chromosome Knobs in United States Maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

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1 reference

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22 May 2018

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5800051

22 May 2018

Molecular and functional diversity of maize

1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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22 May 2018

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1 reference

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Versatile and open software for comparing large genomes

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 December 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/29402214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-018-4490-7

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29402214%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-018-4490-7

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Europe PubMed Central

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1 June 2020

PubMed publication ID

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Europe PubMed Central

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1 June 2020

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