Computational analysis of RNAs (Q48080646)

8 February 2018

title

Computational analysis of RNAs (English)

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8 February 2018

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8 February 2018

publication date

1 January 2006

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8 February 2018

Cold Spring Harbor Symposia on Quantitative Biology

published in

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8 February 2018

volume

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8 February 2018

page(s)

117-128

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8 February 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription

21 January 2018

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The expanding snoRNA world

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MicroRNAs: genomics, biogenesis, mechanism, and function

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The Ribonuclease P Database

21 January 2018

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Plant snoRNAs: functional evolution and new modes of gene expression

21 January 2018

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Prediction of complete gene structures in human genomic DNA

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

The transcriptional landscape of the mammalian genome

21 January 2018

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 January 2018

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Three models for the description of language

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Profile hidden Markov models

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Non–coding RNA genes and the modern RNA world

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

21 January 2018

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What is a hidden Markov model?

21 January 2018

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A model of the statistical power of comparative genome sequence analysis

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

RNA sequence analysis using covariance models

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

The ENCODE (ENCyclopedia Of DNA Elements) Project

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Identifying potential tRNA genes in genomic DNA sequences

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Clusters of internally primed transcripts reveal novel long noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

21 January 2018

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Genome sequence of the Brown Norway rat yields insights into mammalian evolution

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Rfam: annotating non-coding RNAs in complete genomes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

The accuracy of ribosomal RNA comparative structure models

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

A linear space algorithm for computing maximal common subsequences

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Non-coding RNAs: hope or hype?

21 January 2018

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RSEARCH: finding homologs of single structured RNA sequences

21 January 2018

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Hidden Markov models in computational biology. Applications to protein modeling

21 January 2018

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The estimation of stochastic context-free grammars using the Inside-Outside algorithm

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Structural implications of novel diversity in eucaryal RNase P RNA

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Small regulatory RNAs in mammals

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Homologs of small nucleolar RNAs in Archaea

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

A dynamic programming algorithm for RNA structure prediction including pseudoknots

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Noncoding RNA gene detection using comparative sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Computational identification of noncoding RNAs in E. coli by comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Stochastic context-free grammars for tRNA modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Identification of common molecular subsequences

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Evolutionary information for specifying a protein fold

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Compilation of tRNA sequences and sequences of tRNA genes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Trade-offs in detecting evolutionarily constrained sequence by comparative genomics

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

An abundance of RNA regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Riboswitches as versatile gene control elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Initial sequencing and comparative analysis of the mouse genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

The iRMSD: a local measure of sequence alignment accuracy using structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Riboswitches and the role of noncoding RNAs in bacterial metabolic control

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

Calculating nucleic acid secondary structure

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2006.71.003

21 January 2018

Identifiers

DOI

10.1101/SQB.2006.71.003

1 reference

8 February 2018

1 reference

8 February 2018