PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes (Q47898909)

6 February 2018

http://europepmc.org/abstract/MED/29028989

title

PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes (English)

1 reference

6 February 2018

http://europepmc.org/abstract/MED/29028989

David S Wishart

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

David Arndt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Ana Marcu

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Yongjie Liang

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

publication date

25 September 2017

1 reference

6 February 2018

http://europepmc.org/abstract/MED/29028989

published in

Briefings in Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

page(s)

1560-1567

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

Importance of prophages to evolution and virulence of bacterial pathogens

3 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Prophages and bacterial genomics: what have we learned so far?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Pervasive domestication of defective prophages by bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Identification of prophages in bacterial genomes by dinucleotide relative abundance difference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Prophinder: a computational tool for prophage prediction in prokaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

VirSorter: mining viral signal from microbial genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Profile hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

PHASTER: a better, faster version of the PHAST phage search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Identifying bacterial genes and endosymbiont DNA with Glimmer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

CD-HIT: accelerated for clustering the next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

FragGeneScan: predicting genes in short and error-prone reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Prodigal: prokaryotic gene recognition and translation initiation site identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Uncovering Earth’s virome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

Metabolic reprogramming by viruses in the sunlit and dark ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX121

PHAST: a fast phage search tool

21 January 2018

1 reference

12 December 2020

Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences

1 reference

12 December 2020

Computational prospecting the great viral unknown.

1 reference

12 December 2020

ACLAME: a CLAssification of Mobile genetic Elements, update 2010

1 reference

12 December 2020

Viral dark matter and virus-host interactions resolved from publicly available microbial genomes

1 reference

12 December 2020

VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria.

1 reference

12 December 2020

Identifiers

DOI

10.1093/BIB/BBX121

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

DBLP publication ID

journals/bib/ArndtMLW19

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29028989%20AND%20SRC:MED&resulttype=core&format=json