5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes. (Q47894344)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

title

5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

Nathaniel Heintz

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

language of work or name

English

0 references

publication date

28 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

28 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

volume

114

1 reference

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28 March 2020

issue

1 reference

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28 March 2020

page(s)

E7812-E7821

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

Sequence features accurately predict genome-wide MeCP2 binding in vivo.

28 March 2020

cites work

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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10 July 2018

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Using Effect Size-or Why the P Value Is Not Enough

10 July 2018

1 reference

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MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation

10 July 2018

1 reference

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Global epigenomic reconfiguration during mammalian brain development

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

STAR: ultrafast universal RNA-seq aligner

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

10 July 2018

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Fast gapped-read alignment with Bowtie 2

10 July 2018

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ChromHMM: automating chromatin-state discovery and characterization

10 July 2018

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

10 July 2018

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

10 July 2018

1 reference

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Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates

10 July 2018

1 reference

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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Fast signals and slow marks: the dynamics of histone modifications

10 July 2018

1 reference

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

10 July 2018

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Widespread transcription at neuronal activity-regulated enhancers

10 July 2018

1 reference

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10 July 2018

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BSMAP: whole genome bisulfite sequence MAPping program

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

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10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Mouse models of MeCP2 disorders share gene expression changes in the cerebellum and hypothalamus

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Linking DNA methylation and histone modification: patterns and paradigms

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Application of a translational profiling approach for the comparative analysis of CNS cell types

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

DNA methylation landscapes: provocative insights from epigenomics

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

WebLogo: A Sequence Logo Generator

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

Quantification of the sixth DNA base hydroxymethylcytosine in the brain

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604027

C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28847947

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1708044114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

PubMed publication ID

28847947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28847947%20AND%20SRC:MED&resulttype=core&format=json