Homology modelling and molecular dynamics simulations: comparative studies of human aquaporin-1. (Q47797032)

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English	Homology modelling and molecular dynamics simulations: comparative studies of human aquaporin-1.	scientific article

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PubMed publication ID

15071758

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15071758%20AND%20SRC:MED&resulttype=core&format=json

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26 December 2019

title

Homology modelling and molecular dynamics simulations: comparative studies of human aquaporin-1 (English)

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PubMed publication ID

15071758

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26 December 2019

author

Mark S.P. Sansom

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2

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PubMed publication ID

15071758

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26 December 2019

author name string

Richard J Law

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1

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PubMed publication ID

15071758

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publication date

8 April 2004

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PubMed publication ID

15071758

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26 December 2019

published in

European Biophysics Journal

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PubMed publication ID

15071758

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26 December 2019

volume

33

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PubMed publication ID

15071758

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26 December 2019

issue

6

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PubMed publication ID

15071758

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26 December 2019

page(s)

477-489

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PubMed publication ID

15071758

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26 December 2019

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Cellular and molecular biology of the aquaporin water channels

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Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli

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Liquid-vapor oscillations of water in hydrophobic nanopores

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Tetrameric assembly of CHIP28 water channels in liposomes and cell membranes: a freeze-fracture study.

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Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution

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A divide and conquer approach to fast loop modeling

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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A refined structure of human aquaporin-1

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What really prevents proton transport through aquaporin? Charge self-energy versus proton wire proposals

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Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles

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Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer.

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An automated classification of the structure of protein loops.

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Structure and function of water channels.

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Control of the selectivity of the aquaporin water channel family by global orientational tuning

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12 December 2020

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Structural clues in the sequences of the aquaporins

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Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

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Optimizing the hydrogen-bond network in Poisson-Boltzmann equation-based pK(a) calculations.

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Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel

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Grand canonical ensemble Monte Carlo simulation of the dCpG/proflavine crystal hydrate

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Potassium permeation through the KcsA channel: a density functional study

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The pore dimensions of gramicidin A.

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Influence of the membrane potential on the free energy of an intrinsic protein

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Molecular dynamics study of aquaporin-1 water channel in a lipid bilayer

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Modeling of loops in protein structures

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OmpA: a pore or not a pore? Simulation and modeling studies

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Statistical mechanical equilibrium theory of selective ion channels

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Statistical alignment: computational properties, homology testing and goodness-of-fit.

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Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

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VMD: visual molecular dynamics

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Homology modeling, model and software evaluation: three related resources

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Phylogenetic characterization of the MIP family of transmembrane channel proteins

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The Mechanism of Proton Exclusion in the Aquaporin-1 Water Channel

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Structure of a glycerol-conducting channel and the basis for its selectivity

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The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

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Proton conductance by the gramicidin water wire. Model for proton conductance in the F1F0 ATPases?

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Structural basis of water-specific transport through the AQP1 water channel

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Analysis and evaluation of channel models: simulations of alamethicin.

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12 December 2020

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Electrostatics and the ion selectivity of ligand-gated channels

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12 December 2020

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Structural determinants of water permeation through aquaporin-1

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Visualization of a water-selective pore by electron crystallography in vitreous ice

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RETRACTED: Structure of MsbA from E. coli: a homolog of the multidrug resistance ATP binding cassette (ABC) transporters

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Structure and dynamics of a proton wire: a theoretical study of H+ translocation along the single-file water chain in the gramicidin A channel

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Crystal structure and mechanism of a calcium-gated potassium channel

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Overexpression of mammalian integral membrane proteins for structural studies.

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X-ray structure of a voltage-dependent K+ channel

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12 December 2020

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RASMOL: biomolecular graphics for all

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12 December 2020

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Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces

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12 December 2020

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Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel

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The role and perspective of ab initio molecular dynamics in the study of biological systems

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12 December 2020

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Deviations from standard atomic volumes as a quality measure for protein crystal structures

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12 December 2020

based on heuristic

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Comparative protein modelling by satisfaction of spatial restraints

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12 December 2020

based on heuristic

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Structure of bacteriorhodopsin at 1.55 A resolution

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12 December 2020

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X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity

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12 December 2020

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Identifiers

DOI

10.1007/S00249-004-0398-Z

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Europe PubMed Central

PubMed publication ID

15071758

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15071758%20AND%20SRC:MED&resulttype=core&format=json

retrieved

26 December 2019

PubMed publication ID

15071758

1 reference

stated in

Europe PubMed Central

PubMed publication ID

15071758

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15071758%20AND%20SRC:MED&resulttype=core&format=json

retrieved

26 December 2019

 

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