Evolutionary analysis of the TPP-dependent enzyme family. (Q46878395)

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scientific article published on 28 November 2007

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English	Evolutionary analysis of the TPP-dependent enzyme family.	scientific article published on 28 November 2007

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scholarly article

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stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

title

Evolutionary analysis of the TPP-dependent enzyme family (English)

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stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

author

Paul A Dalby

series ordinal

3

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Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

author name string

Seán J Costelloe

series ordinal

1

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Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

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28 December 2019

John M Ward

series ordinal

2

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Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

publication date

28 November 2007

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stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

published in

Journal of Molecular Evolution

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stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

volume

66

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Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

issue

1

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Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

page(s)

36-49

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Europe PubMed Central

PubMed publication ID

18043855

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

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28 December 2019

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Escherichia coli glyoxalate carboligase. Properties and reconstitution with 5-deazaFAD and 1,5-dihydrodeazaFADH2

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Snapshot of a key intermediate in enzymatic thiamin catalysis: crystal structure of the alpha-carbanion of (alpha,beta-dihydroxyethyl)-thiamin diphosphate in the active site of transketolase from Saccharomyces cerevisiae

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Asp477 is a determinant of the enantioselectivity in yeast transketolase

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Domain relationships in thiamine diphosphate-dependent enzymes

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A structural explanation for the twilight zone of protein sequence homology

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Examination of the Thiamin Diphosphate Binding Site in Yeast Transketolase by Site-Directed Mutagenesis

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Refined structure of transketolase from Saccharomyces cerevisiae at 2.0 A resolution

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Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis

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Pyruvate decarboxylase is like acetolactate synthase (ILV2) and not like the pyruvate dehydrogenase E1 subunit

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Molecular evolutionary analysis of the thiamine-diphosphate-dependent enzyme, transketolase.

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

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12 December 2020

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Phylogenetic classification and the universal tree

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Molecular cloning, DNA sequencing, and biochemical analyses of Escherichia coli glyoxylate carboligase. An enzyme of the acetohydroxy acid synthase-pyruvate oxidase family

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Amino acid substitution matrices from protein blocks

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Examination of substrate binding in thiamin diphosphate-dependent transketolase by protein crystallography and site-directed mutagenesis

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A thiamin diphosphate binding fold revealed by comparison of the crystal structures of transketolase, pyruvate oxidase and pyruvate decarboxylase

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12 December 2020

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The phosphonopyruvate decarboxylase from Bacteroides fragilis

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12 December 2020

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The crystal structure of benzoylformate decarboxylase at 1.6 A resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes

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Identification of catalytically important residues in yeast transketolase

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Three-dimensional structure of transketolase, a thiamine diphosphate dependent enzyme, at 2.5 A resolution.

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Crystal structure of thiamindiphosphate-dependent indolepyruvate decarboxylase from Enterobacter cloacae, an enzyme involved in the biosynthesis of the plant hormone indole-3-acetic acid

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Identification of the gene encoding sulfopyruvate decarboxylase, an enzyme involved in biosynthesis of coenzyme M.

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Crystal structures of the key anaerobic enzyme pyruvate:ferredoxin oxidoreductase, free and in complex with pyruvate

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Evolution of function in protein superfamilies, from a structural perspective.

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How Thiamin Diphosphate Is Activated in Enzymes

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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Crystal structure of 2-oxoisovalerate and dehydrogenase and the architecture of 2-oxo acid dehydrogenase multienzyme complexes

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Crystal structure of 1-deoxy-D-xylulose 5-phosphate synthase, a crucial enzyme for isoprenoids biosynthesis.

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Role of flavin in acetoin production by two bacterial pyruvate oxidases

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Identifiers

DOI

10.1007/S00239-007-9056-2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

PubMed publication ID

18043855

1 reference

stated in

Europe PubMed Central

PubMed publication ID

18043855

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18043855%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 December 2019

ResearchGate publication ID

5803730

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