Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome (Q46773743)

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English	Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome	scientific article

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Europe PubMed Central

PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

title

Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome (English)

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

main subject

Drosophila

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author

Dmitri A. Petrov

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3

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16044248

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http://europepmc.org/abstract/MED/16044248

author name string

Nadia D Singh

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1

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

Jerel C Davis

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2

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

publication date

21 July 2005

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

published in

Journal of Molecular Evolution

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

volume

61

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Europe PubMed Central

PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

issue

3

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Europe PubMed Central

PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

page(s)

315-324

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PubMed publication ID

16044248

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25 December 2017

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http://europepmc.org/abstract/MED/16044248

cites work

Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

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21 January 2018

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

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21 January 2018

Translational selection and molecular evolution

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The effect of linkage on limits to artificial selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Paucity of genes on the Drosophila X chromosome showing male-biased expression

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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On the effective size of populations with separate sexes, with particular reference to sex-linked genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Effect of strong directional selection on weakly selected mutations at linked sites: implication for synonymous codon usage

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Local recombination and mutation effects on molecular evolution in Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Extensive gene traffic on the mammalian X chromosome

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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The evolution of sex chromosomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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The evolutionary analysis of "orphans" from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Highly expressed genes in yeast evolve slowly.

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PubMed

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12 December 2020

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Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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The selection-mutation-drift theory of synonymous codon usage

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Population, evolutionary and genomic consequences of interference selection

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Nucleotide substitutions and the evolution of duplicate genes

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12 December 2020

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Neutral effect of recombination on base composition in Drosophila

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12 December 2020

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Effective population size and population subdivision in demographically structured populations

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Retroposed new genes out of the X in Drosophila

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PubMed

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12 December 2020

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Linkage disequilibria and the site frequency spectra in the su(s) and su(w(a)) regions of the Drosophila melanogaster X chromosome

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Reduced natural selection associated with low recombination in Drosophila melanogaster.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

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12 December 2020

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Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Intron size and natural selection

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

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PubMed

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The evolution of dosage-compensation mechanisms

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PAML: a program package for phylogenetic analysis by maximum likelihood

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Differences in crossover frequency and distribution among three sibling species of Drosophila.

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PubMed

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12 December 2020

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Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linkage limits the power of natural selection in Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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inferred from PubMed ID database lookup

Insights into the evolutionary process from patterns of DNA sequence variability

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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An evolutionary perspective on synonymous codon usage in unicellular organisms

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/16044248

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12 December 2020

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Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret

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12 December 2020

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Interactions between natural selection, recombination and gene density in the genes of Drosophila.

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12 December 2020

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Mutation pressure, natural selection, and the evolution of base composition in Drosophila

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12 December 2020

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Identifiers

DOI

10.1007/S00239-004-0287-1

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Europe PubMed Central

PubMed publication ID

16044248

retrieved

25 December 2017

reference URL

http://europepmc.org/abstract/MED/16044248

PubMed publication ID

16044248

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16044248

retrieved

25 December 2017

reference URL

http://europepmc.org/abstract/MED/16044248

ResearchGate publication ID

7701904

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