Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis (Q46575827)

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scientific article published on 16 June 2005

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English	Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis	scientific article published on 16 June 2005

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis (English)

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

object named as

Rick H Cote

3

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Karen L Carleton

1

object named as

Karen L Carleton

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

author name string

Tyrone C Spady

2

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

publication date

16 June 2005

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

61

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

1

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

75-89

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

Functional diversification of lepidopteran opsins following gene duplication.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0289-Z

21 January 2018

Response properties of cones from the retina of the tiger salamander

1 reference

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21 January 2018

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

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21 January 2018

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

1 reference

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21 January 2018

Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Evolutionary analysis of rhodopsin and cone pigments: connecting the three-dimensional structure with spectral tuning and signal transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Evolutionary traces of functional surfaces along G protein signaling pathway.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Difference in molecular structure of rod and cone visual pigments studied by Fourier transform infrared spectroscopy.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Role of visual pigment properties in rod and cone phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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The effects of amino acid replacements of glycine 121 on transmembrane helix 3 of rhodopsin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin

1 reference

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12 December 2020

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Structure and function in rhodopsin: peptide sequences in the cytoplasmic loops of rhodopsin are intimately involved in interaction with rhodopsin kinase

1 reference

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12 December 2020

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Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change.

1 reference

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12 December 2020

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Mice lacking G-protein receptor kinase 1 have profoundly slowed recovery of cone-driven retinal responses

1 reference

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12 December 2020

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Amino acid residues controlling the properties and functions of rod and cone visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Rhodopsin: insights from recent structural studies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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The carboxyl-terminal domain is essential for rhodopsin transport in rod photoreceptors

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Spectral tuning of avian violet- and ultraviolet-sensitive visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Molecular mechanism of spontaneous pigment activation in retinal cones

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Analysis of heregulin symmetry by weighted evolutionary tracing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Rhodopsin mutants discriminate sites important for the activation of rhodopsin kinase and Gt

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Advances in Determination of a High-Resolution Three-Dimensional Structure of Rhodopsin, a Model of G-Protein-Coupled Receptors (GPCRs)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Molecular evolution of proteins involved in vertebrate phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Identification of functionally conserved residues with the use of entropy-variability plots

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Regulation of rhodopsin dephosphorylation by arrestin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Identification of the Cl(-)-binding site in the human red and green color vision pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Automatic methods for predicting functionally important residues

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Ancient colour vision: multiple opsin genes in the ancestral vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Three cytoplasmic loops of rhodopsin interact with transducin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Differences in transduction between rod and cone photoreceptors: an exploration of the role of calcium homeostasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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A regulator of G protein signaling interaction surface linked to effector specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Conserved proline residue at position 189 in cone visual pigments as a determinant of molecular properties different from rhodopsins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Origin and functional impact of dark noise in retinal cones

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Vertebrate photoreceptors

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Phototransduction and adaptation in rods, single cones, and twin cones of the striped bass retina: a comparative study.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Evolutionary predictions of binding surfaces and interactions.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Adaptive evolution of the African and Indonesian coelacanths to deep-sea environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Molecular evolution of vertebrate visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Molecular genetics and the evolution of ultraviolet vision in vertebrates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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The spectrum of human rhodopsin disease mutations through the lens of interspecific variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Spectral tuning in the mammalian short-wavelength sensitive cone pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Characterization of retinal guanylate cyclase-activating protein 3 (GCAP3) from zebrafish to man.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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Spectral tuning and evolution of short wave-sensitive cone pigments in cottoid fish from Lake Baikal

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

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DNASTAR's Lasergene sequence analysis software.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Recent advances in our understanding of rhodopsin and phototransduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of transducin by a Xenopus short wavelength visual pigment

1 reference

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12 December 2020

based on heuristic

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Mechanisms of spectral tuning in blue cone visual pigments. Visible and raman spectroscopy of blue-shifted rhodopsin mutants

1 reference

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12 December 2020

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A molecular timescale for vertebrate evolution

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of rhodopsin: A G protein-coupled receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Positive selection within sperm-egg adhesion domains of fertilin: an ADAM gene with a potential role in fertilization

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method to predict functional residues in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dimerization of G-protein-coupled receptors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanisms of vertebrate photoreceptor light adaptation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

G protein-coupled receptor rhodopsin: a prospectus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular genetics and evolution of red and green color vision in vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin phosphorylation: 30 years later

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping of the amino acids in membrane-embedded helices that interact with the retinal chromophore in bovine rhodopsin.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phototransduction mechanism in retinal rods and cones. The Friedenwald Lecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

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Unusual thermal and conformational properties of the rhodopsin congenital night blindness mutant Thr-94 --> Ile.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Low amplification and fast visual pigment phosphorylation as mechanisms characterizing cone photoresponses

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular mechanism for the spectral shifts between vertebrate ultraviolet- and violet-sensitive cone visual pigments.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of positive selection acting at the human dopamine receptor D4 gene locus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How color visual pigments are tuned.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The spectral tuning in the short wavelength-sensitive type 2 pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15988624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-004-0289-Z

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

23 December 2017

http://europepmc.org/abstract/MED/15988624

ResearchGate publication ID

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