A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus). (Q46554456)

23 December 2017

title

A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus). (English)

1 reference

23 December 2017

0 references

1 reference

23 December 2017

Lauri Peil

0 references

Spiros Papakostas

0 references

Anti Vasemägi

0 references

Juha-Pekka Vähä

1 reference

23 December 2017

Mikael Himberg

series ordinal

object named as

Mikael Himberg

1 reference

23 December 2017

publication date

4 April 2012

1 reference

23 December 2017

published in

Molecular Ecology

1 reference

23 December 2017

volume

1 reference

23 December 2017

issue

1 reference

23 December 2017

page(s)

3516-3530

1 reference

23 December 2017

CaR activation increases TNF production by mTAL cells via a Gi-dependent mechanism

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Calcium-sensing receptor signaling pathways in medullary thick ascending limb cells mediate COX-2-derived PGE2 production: functional significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Heterogeneous RNA-binding protein M4 is a receptor for carcinoembryonic antigen in Kupffer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Calcium and the cytoskeleton

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Cellular stress and RNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Extracellular Ca2+-sensing receptors--an overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Osmotic stress and the yeast cytoskeleton: phenotype-specific suppression of an actin mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Is proteomics the new genomics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Andromeda: a peptide search engine integrated into the MaxQuant environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The interplay between the glucocorticoid receptor and nuclear factor-kappaB or activator protein-1: molecular mechanisms for gene repression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Differential gene expression associated with euryhalinity in sea bream (Sparus sarba).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Options and considerations when selecting a quantitative proteomics strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Proteomic and physiological responses of leopard sharks (Triakis semifasciata) to salinity change

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Teleost fish osmoregulation: what have we learned since August Krogh, Homer Smith, and Ancel Keys

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Co-ordination of osmotic stress responses through osmosensing and signal transduction events in fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of nitrogenous waste

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Osmotic stress sensing and signaling in fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Fish proteome analysis: model organisms and non-sequenced species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Annexins: from structure to function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The glucocorticoid receptor heterocomplex gene STIP1 is associated with improved lung function in asthmatic subjects treated with inhaled corticosteroids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Why do hubs tend to be essential in protein networks?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Adaptive divergence in a high gene flow environment: Hsc70 variation in the European flounder (Platichthys flesus L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Heterogeneous ribonucleoprotein m is a splicing regulatory protein that can enhance or silence splicing of alternatively spliced exons

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Lethality and centrality in protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Hrp59, an hnRNP M protein in Chironomus and Drosophila, binds to exonic splicing enhancers and is required for expression of a subset of mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Gene expression analysis for the identification of selection and local adaptation in fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Extracellular calcium-sensing receptors in fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Multiplicity of expression of Na+,K+-ATPase {alpha}-subunit isoforms in the gill of Atlantic salmon (Salmo salar): cellular localisation and absolute quantification in response to salinity change.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Proteomics: a pragmatic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Distinct freshwater and seawater isoforms of Na+/K+-ATPase in gill chloride cells of Atlantic salmon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Molecular control of immune/inflammatory responses: interactions between nuclear factor-kappa B and steroid receptor-signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Plasma membrane-associated annexin A6 reduces Ca2+ entry by stabilizing the cortical actin cytoskeleton.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The adaptive significance of maternal effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Polyvalent cation receptor proteins (CaRs) are salinity sensors in fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Interpretation of shotgun proteomic data: the protein inference problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Structural studies on the co-chaperone Hop and its complexes with Hsp90.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Plectin-controlled keratin cytoarchitecture affects MAP kinases involved in cellular stress response and migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Evolutionary history of the European whitefish Coregonus lavaretus (L.) species complex as inferred from mtDNA phylogeography and gill-raker numbers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Parallel evolution of ecomorphological traits in the European whitefish Coregonus lavaretus (L.) species complex during postglacial times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Proteomic profiling of early life stages of European grayling (Thymallus thymallus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

G-protein-coupled-receptor kinases mediate TNFα-induced NFκB signalling via direct interaction with and phosphorylation of IκBα.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Maternal genetic effects on adaptive divergence between anadromous and resident brook charr during early life history

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

DAnTE: a statistical tool for quantitative analysis of -omics data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Chaperoning of glucocorticoid receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Functional topology in a network of protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Use and misuse of the gene ontology annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Na+/K+-ATPase alpha-isoform switching in gills of rainbow trout (Oncorhynchus mykiss) during salinity transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Genetic differentiation among European whitefish ecotypes based on microsatellite data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Analyzing biological network parameters with CentiScaPe

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Tight Junction Pore and Leak Pathways: A Dynamic Duo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Independent regulation of Hsp70 and Hsp90 chaperones by Hsp70/Hsp90-organizing protein Sti1 (Hop1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Statistical significance for genomewide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Minireview: rapid glucocorticoid signaling via membrane-associated receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Environmental proteomics: changes in the proteome of marine organisms in response to environmental stress, pollutants, infection, symbiosis, and development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

SUMO modification of heterogeneous nuclear ribonucleoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

A directed protein interaction network for investigating intracellular signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Quantitative proteomic analysis of single pancreatic islets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

NF-kappaB activation is essential for angiotensin II-dependent proliferation and migration of vascular smooth muscle cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

Potential genetic benefits of mate selection in whitefish

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05553.X

10.1111/J.1365-294X.2012.05553.X

21 January 2018

Identifiers

DOI

1 reference

23 December 2017

1 reference

23 December 2017