Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale (Q46279607)

8 January 2018

title

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale (English)

1 reference

8 January 2018

0 references

1 reference

Gordon William Harkins

Gordon W Harkins

0 references

Philippe Ortet

0 references

Arvind Varsani

0 references

Philippe Roumagnac

0 references

Carolyn M Malmstrom

1 reference

8 January 2018

author name string

Pauline Bernardo

1 reference

8 January 2018

Tristan Charles-Dominique

1 reference

8 January 2018

Mohamed Barakat

1 reference

8 January 2018

Emmanuel Fernandez

1 reference

8 January 2018

Denis Filloux

1 reference

8 January 2018

Penelope Hartnady

1 reference

8 January 2018

Tony A Rebelo

1 reference

8 January 2018

Stephen R Cousins

1 reference

8 January 2018

François Mesleard

1 reference

8 January 2018

Damien Cohez

1 reference

8 January 2018

Nicole Yavercovski

1 reference

8 January 2018

Michel Peterschmitt

1 reference

8 January 2018

Darren P Martin

1 reference

8 January 2018

publication date

20 October 2017

1 reference

8 January 2018

published in

The ISME Journal

1 reference

8 January 2018

volume

1 reference

8 January 2018

issue

1 reference

8 January 2018

page(s)

173-184

1 reference

8 January 2018

Creative Commons Attribution 4.0 International

start time

20 October 2017

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

describes a project that uses

ArcGIS

object named as

ArcGIS

2 references

18 June 2022

https://europepmc.org/article/PMC/5739011

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

maintained by WikiProject

1 reference

Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Illuminating structural proteins in viral "dark matter" with metaproteomics

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Spread of introduced viruses to new plants in natural ecosystems and the threat this poses to plant biodiversity.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Plant Virus Metagenomics: Advances in Virus Discovery

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Ecosystem simplification, biodiversity loss and plant virus emergence.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Higher plant diversity promotes higher diversity of fungal pathogens, while it decreases pathogen infection per plant.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Non-random biodiversity loss underlies predictable increases in viral disease prevalence

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Plant virus metagenomics: biodiversity and ecology

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Effect of biodiversity changes in disease risk: exploring disease emergence in a plant-virus system.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Exploring the viral world through metagenomics

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

The big unknown: plant virus biodiversity

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Impacts of biodiversity on the emergence and transmission of infectious diseases

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Biodiversity conservation and agricultural sustainability: towards a new paradigm of 'ecoagriculture' landscapes

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Pathogen-induced reversal of native dominance in a grassland community

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Community heterogeneity and the evolution of interactions between plants and insect herbivores

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Wild plants and viruses: under-investigated ecosystems.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Plant virus biodiversity and ecology

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

The current and future dynamics of disease in plant communities

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Evolutionary ecology of plant diseases in natural ecosystems

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Biodiversity hotspots for conservation priorities

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

CAP3: A DNA sequence assembly program

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Basic local alignment search tool

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Testing the species traits-environment relationships: the fourth-corner problem revisited

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Virus infection in remnant native bunchgrasses from invaded California grasslands

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Invasive annual grasses indirectly increase virus incidence in California native perennial bunchgrasses

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5739011

Pathogen accumulation and long-term dynamics of plant invasions

15 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

Principal Component Analysis of Taxonomic Data with Multi-State Discrete Characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

EFFECTS OF GRASSLAND PLANT SPECIES DIVERSITY, ABUNDANCE, AND COMPOSITION ON FOLIAR FUNGAL DISEASE

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

Virus impact at the interface of an ancient ecosystem and a recent agroecosystem: studies on three legume-infecting potyviruses in the southwest Australian floristic region

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

Matching species traits to environmental variables: a new three-table ordination method

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

The human respiratory tract microbial community structures in healthy and cystic fibrosis infants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.155

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2017.155

1 reference

8 January 2018

PMC publication ID

5739011

1 reference

8 January 2018

PubMed publication ID

29053145

1 reference

8 January 2018