A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo. (Q46249210)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23735295%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23735295%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23735295%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Kenneth P Watkins

1 reference

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2 March 2020

Alice Barkan

series ordinal

1 reference

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2 March 2020

publication date

4 June 2013

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2 March 2020

1 reference

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2 March 2020

volume

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2 March 2020

issue

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2 March 2020

page(s)

2265-2275

1 reference

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

2 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

29 September 2018

1 reference

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The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA.

29 September 2018

1 reference

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The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

29 September 2018

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High-resolution view of the yeast meiotic program revealed by ribosome profiling

29 September 2018

1 reference

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Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts

29 September 2018

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

29 September 2018

1 reference

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The downstream atpE cistron is efficiently translated via its own cis-element in partially overlapping atpB–atpE dicistronic mRNAs in chloroplasts

29 September 2018

1 reference

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Expression of Plastid Genes: Organelle-Specific Elaborations on a Prokaryotic Scaffold

29 September 2018

1 reference

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Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

29 September 2018

1 reference

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Selection of Shine-Dalgarno sequences in plastids

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Intertwined translational regulations set uneven stoichiometry of chloroplast ATP synthase subunits

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Translational coupling of the maize chloroplast atpB and atpE genes.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Introns and the origin of nucleus-cytosol compartmentalization

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Functional Shine-Dalgarno-like sequences for translational initiation of chloroplast mRNAs.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Ribosomes pause during the expression of the large ATP synthase gene cluster in spinach chloroplasts

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

Tissue-dependent plastid RNA splicing in maize: transcripts from four plastid genes are predominantly unspliced in leaf meristems and roots

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723625

A nuclear gene in maize required for the translation of the chloroplast atpB/E mRNA

29 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23735295

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ribosomes pause at specific sites during synthesis of membrane-bound chloroplast reaction center protein D1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23735295

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in chlamydomonas

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23735295