A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores (Q45967022)

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scientific article published on March 1, 2003

Language	Label	Description	Also known as
English	A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores	scientific article published on March 1, 2003

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores (English)

1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

support vector machine

1 reference

based on heuristic

inferred from title

1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Shotgun proteomics

1 reference

based on heuristic

inferred from title

William S. Noble

4

object named as

William Stafford Noble

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

author name string

Weiqun Li

2

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

D. C. Anderson

1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12716127

28 December 2023

Donald G. Payan

3

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12716127

28 December 2023

language of work or name

1 reference

National Center for Biotechnology Information

PubMed publication ID

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12716127

28 December 2023

publication date

1 March 2003

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

full work available at URL

https://pubs.acs.org/doi/pdf/10.1021/pr0255654

1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Journal of Proteome Research

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

2

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

2

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

137-146

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

Directed proteomic analysis of the human nucleolus

1 reference

2 April 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/S0960-9822(01)00650-9

Peptides presented to the immune system by the murine class II major histocompatibility complex molecule I-Ad

1

1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Mutagenesis and mapping of a mouse gene, Clock, essential for circadian behavior

2

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10.1021/PR0255654

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Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

3

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10.1021/PR0255654

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The yeast nuclear pore complex: composition, architecture, and transport mechanism

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10.1021/PR0255654

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28 December 2023

Nature Biotechnology

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19

247

author name string

Washburn M.

publication date

2002

1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Functional organization of the yeast proteome by systematic analysis of protein complexes

6

1 reference

10.1021/PR0255654

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28 December 2023

Towards defining the urinary proteome using liquid chromatography-tandem mass spectrometry. I. Profiling an unfractionated tryptic digest

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1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Sequence analysis of oligopeptides by secondary ion/collision activated dissociation mass spectrometry

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1 reference

10.1021/PR0255654

https://api.crossref.org/works/10.1021/PR0255654

28 December 2023

Sequence analysis of polypeptides by collision activated dissociation on a triple quadrupole mass spectrometer

11

1 reference

10.1021/PR0255654

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28 December 2023

Proceedings of the National Academy of Sciences of the United States of America

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83

7

author name string

Hunt D.

publication date

1986

1 reference

10.1021/PR0255654

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28 December 2023

Oligopeptide sequence analysis by collision-activated dissociation of multiply charged ions

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10.1021/PR0255654

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28 December 2023

Contributions of mass spectrometry to peptide and protein structure

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10.1021/PR0255654

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28 December 2023

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

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28 December 2023

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

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28 December 2023

Proceedings of the National Academy of Sciences of the United States of America

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10

5

author name string

Shevchenko A.

publication date

1996

1 reference

10.1021/PR0255654

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28 December 2023

Analytical Chemistry

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69

4001

author name string

Qin J.

publication date

1997

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Planar chromatography

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28 December 2023

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

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28 December 2023

Probability-based protein identification by searching sequence databases using mass spectrometry data

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28 December 2023

Journal of the American Society for Mass Spectrometry

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5

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author name string

Eng J.

publication date

1994

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Analytical Chemistry

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Yates J.

publication date

1995

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Analytical Chemistry

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Yates J.

publication date

1995

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Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.

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10.1021/PR0255654

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28 December 2023

Direct analysis of protein complexes using mass spectrometry

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10.1021/PR0255654

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28 December 2023

Qscore: an algorithm for evaluating SEQUEST database search results

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28 December 2023

Multi-class protein fold recognition using support vector machines and neural networks

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28 December 2023

Proceedings of the National Academy of Sciences of the United States of America

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Brown M.

publication date

2000

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Support vector machine classification and validation of cancer tissue samples using microarray expression data

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The perceptron: a probabilistic model for information storage and organization in the brain

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Use of MEDUSA-based data analysis and capillary HPLC-ion-trap mass spectrometry to examine complex immunoaffinity extracts of RBAp48.

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28 December 2023

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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10.1021/PR0255654

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28 December 2023

The interpretation of collision-induced dissociation tandem mass spectra of peptides

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Effects of the position of internal histidine residues on the collision-induced fragmentation of triply protonated tryptic peptides

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A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes

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28 December 2023

Identifiers

10.1021/PR0255654

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/12716127

ResearchGate publication ID

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