Methods for estimation of model accuracy in CASP12. (Q45945240)

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31 March 2020

title

Methods for estimation of model accuracy in CASP12 (English)

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Keehyoung Joo

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31 March 2020

Chen Keasar

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31 March 2020

Ali H A Maghrabi

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Balachandran Manavalan

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31 March 2020

David Ménendez Hurtado

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31 March 2020

Claudio Mirabello

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31 March 2020

Robert Pilstål

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31 March 2020

Tomer Sidi

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Karolis Uziela

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language of work or name

English

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publication date

17 October 2017

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volume

86 Suppl 1

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page(s)

361-373

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An analysis of incorrectly folded protein models. Implications for structure predictions.

31 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Assessment of protein models with three-dimensional profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Can correct protein models be identified?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

QMEAN: A comprehensive scoring function for model quality assessment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

CAFASP2: the second critical assessment of fully automated structure prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Pcons: a neural-network-based consensus predictor that improves fold recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

3D-Jury: a simple approach to improve protein structure predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Assessment of predictions in the model quality assessment category.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

The ModFOLD4 server for the quality assessment of 3D protein models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

ProQ3: Improved model quality assessments using Rosetta energy terms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Pcons5: combining consensus, structural evaluation and fold recognition scores.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Identification of correct regions in protein models using structural, alignment, and consensus information

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Improved model quality assessment using ProQ2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

A unified statistical framework for sequence comparison and structure comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

A study of quality measures for protein threading models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

PconsD: ultra rapid, accurate model quality assessment for protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Improved prediction of protein side-chain conformations with SCWRL4

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Near-native structure refinement using in vacuo energy minimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction 1 1Edited by F. Cohen

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

SVMQA: support-vector-machine-based protein single-model quality assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Prediction of disordered regions in proteins from position specific score matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Prediction of global and local model quality in CASP8 using the ModFOLD server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

ProQ2: estimation of model accuracy implemented in Rosetta

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

The Protein Model Portal--a comprehensive resource for protein structure and model information

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Evaluation of model quality predictions in CASP9

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Assessment of the assessment: evaluation of the model quality estimates in CASP10

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Automated prediction of CASP-5 structures using the Robetta server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Assessment of model accuracy estimations in CASP12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

LGA: A method for finding 3D similarities in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

CAD-score: a new contact area difference-based function for evaluation of protein structural models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

Assessment of global and local model quality in CASP8 using Pcons and ProQ

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

The ModFOLD server for the quality assessment of protein structural models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.25395

21 January 2018

Identifiers

DOI

10.1002/PROT.25395

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28975666%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

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