Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system (Q45286348)

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scientific article published on 20 April 2012

Language	Label	Description	Also known as
English	Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system	scientific article published on 20 April 2012

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scholarly article

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Europe PubMed Central

PubMed publication ID

11 December 2017

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system (English)

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Europe PubMed Central

PubMed publication ID

11 December 2017

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Maria Suarez-Diez

3

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11 December 2017

Ianina L. Conte

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author name string

Ramiro Vilchez-Vargas

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11 December 2017

Robert Geffers

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11 December 2017

Agnes Waliczek

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11 December 2017

Vanessa Sabrina Kaser

6

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11 December 2017

Monika Kralova

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11 December 2017

Dietmar H Pieper

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11 December 2017

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20 April 2012

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11 December 2017

Environmental Microbiology

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11 December 2017

15

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11 December 2017

1016-1039

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11 December 2017

Alkane hydroxylases involved in microbial alkane degradation

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21 January 2018

Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases

1 reference

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Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation

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Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

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Shared probe design and existing microarray reanalysis using PICKY.

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Identification of two new sets of genes for dibenzothiophene transformation in Burkholderia sp. DBT1.

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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Evolutionary relationships among extradiol dioxygenases

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Aromatic hydrocarbon dioxygenases in environmental biotechnology

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Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8.

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Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products

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Automatic policing of biochemical annotations using genomic correlations

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Development of a 60-mer oligonucleotide microarray on the basis of benzene monooxygenase gene diversity

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Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries

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Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX.

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Diversity of catechol 2,3-dioxygenase genes of bacteria responding to dissolved organic matter derived from different sources in a eutrophic lake

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Isolation and functional analysis of cytochrome P450 CYP153A genes from various environments

1 reference

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Evolution of the soluble diiron monooxygenases

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Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

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Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

1 reference

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Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

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Development of an environmental functional gene microarray for soil microbial communities

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The degradation of n-hexadecane in soil by thermophilic geobacilli

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DNA extraction from soils: old bias for new microbial diversity analysis methods

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Capacity of the Bioremediation Technology for Clean-Up of Soil and Groundwater Contaminated with Petroleum Hydrocarbons

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First investigation of the microbiology of the deepest layer of ocean crust

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Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation.

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Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.

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Cloning of a gene cluster involved in the catabolism of p-nitrophenol by Arthrobacter sp. strain JS443 and characterization of the p-nitrophenol monooxygenase

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Aerobic degradation of polychlorinated biphenyls

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Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

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Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

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Genetic diversity of benzoyl coenzyme A reductase genes detected in denitrifying isolates and estuarine sediment communities

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Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray

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Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds

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Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer

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Unravelling microbial communities with DNA-microarrays: challenges and future directions

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GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

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Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531.

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Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker

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Identifiers

10.1111/J.1462-2920.2012.02752.X

1 reference

Europe PubMed Central

PubMed publication ID

11 December 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

11 December 2017

ResearchGate publication ID

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