A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (Q45169446)

10 December 2017

title

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (English)

1 reference

10 December 2017

1 reference

1 reference

10 December 2017

Jean Hausser

0 references

Lukasz Jaskiewicz

1 reference

10 December 2017

Shivendra Kishore

1 reference

10 December 2017

Lukas Burger

series ordinal

1 reference

10 December 2017

Mohsen Khorshid

series ordinal

1 reference

10 December 2017

publication date

15 May 2011

1 reference

10 December 2017

1 reference

10 December 2017

1 reference

10 December 2017

1 reference

10 December 2017

page(s)

559-564

1 reference

Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome

10 December 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Coordinated posttranscriptional mRNA population dynamics during T-cell activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Relief of microRNA-mediated translational repression in human cells subjected to stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

RNA-binding protein Dnd1 inhibits microRNA access to target mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

HuR recruits let-7/RISC to repress c-Myc expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP identifies Nova-regulated RNA networks in the brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Argonaute proteins at a glance

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP: a method for identifying protein-RNA interaction sites in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIP: construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

High sequence specificity of micrococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Structural basis for recognition of AU-rich element RNA by the HuD protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the in vivo stability of ARE-containing mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

A multifunctional human Argonaute2-specific monoclonal antibody

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Computational analysis of small RNA cloning data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1608

Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system.

21 January 2018

1 reference

12 December 2020

Eukaryotic mRNPs may represent posttranscriptional operons

1 reference

12 December 2020

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

1 reference

12 December 2020

Kinetics of the photochemical addition of cysteine-35S to polynucleotides and nucleic acids

1 reference

12 December 2020

ELAV protein HuA (HuR) can redistribute between nucleus and cytoplasm and is upregulated during serum stimulation and T cell activation.

1 reference

12 December 2020

Ribonuclease T1, Structure and function

1 reference

12 December 2020

Identifiers

DOI

10.1038/NMETH.1608

1 reference

Dimensions Publication ID

10 December 2017

1025585804

0 references

1 reference