ChimeraScan: a tool for identifying chimeric transcription in sequencing data (Q33992728)

30 July 2017

title

ChimeraScan: a tool for identifying chimeric transcription in sequencing data (English)

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30 July 2017

Matthew K Iyer

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30 July 2017

Arul M Chinnaiyan

series ordinal

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30 July 2017

Christopher A Maher

series ordinal

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30 July 2017

language of work or name

English

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publication date

11 August 2011

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30 July 2017

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inferred from page(s)

published in

Bioinformatics

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

2903-2904

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deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Chimeric transcript discovery by paired-end transcriptome sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Transcriptome sequencing to detect gene fusions in cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Decoding the fine-scale structure of a breast cancer genome and transcriptome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187648

MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR467

10.1093/BIOINFORMATICS/BTR467

21 January 2018

Identifiers

DOI

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journals/bioinformatics/IyerCM11

30 July 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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30 July 2017

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