Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach. (Q33983023)

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English	Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach.	scientific article

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7 February 2020

Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach (English)

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7 February 2020

support vector machine

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based on heuristic

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Ganesan Pugalenthi

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Ganesan Pugalenthi

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30 July 2017

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Khader Shameer

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7 February 2020

Krishna Kumar Kandaswamy

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7 February 2020

Ponnuthurai N Suganthan

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7 February 2020

Govindaraju Archunan

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7 February 2020

Ramanathan Sowdhamini

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7 February 2020

Ganesan Pugalenthi

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17 June 2010

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Bioinformatics and Biology Insights

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7 February 2020

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7 February 2020

33-42

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7 February 2020

describes a project that uses

support vector machine

1 reference

based on heuristic

inferred from title

Three-dimensional domain swapping in nitrollin, a single-domain betagamma-crystallin from Nitrosospira multiformis, controls protein conformation and stability but not dimerization

1 reference

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Molecular mechanisms of polypeptide aggregation in human diseases

1 reference

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Identification of catalytic residues from protein structure using support vector machine with sequence and structural features.

1 reference

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Data growth and its impact on the SCOP database: new developments

1 reference

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AAindex: amino acid index database, progress report 2008

1 reference

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1 reference

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A machine learning approach for the identification of odorant binding proteins from sequence-derived properties

1 reference

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Molecular dynamics simulations of human cystatin C and its L68Q varient to investigate the domain swapping mechanism

1 reference

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Domain swapping reveals that the C- and N-terminal domains of DnaG and DnaB, respectively, are functional homologues

1 reference

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28 July 2018

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

1 reference

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28 July 2018

An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

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28 July 2018

Runaway domain swapping in amyloid-like fibrils of T7 endonuclease I.

1 reference

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28 July 2018

Deposition diseases and 3D domain swapping

1 reference

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28 July 2018

Computational studies of the reversible domain swapping of p13suc1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901629

28 July 2018

DIAL: a web-based server for the automatic identification of structural domains in proteins

1 reference

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28 July 2018

Data mining in bioinformatics using Weka

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28 July 2018

Three-dimensional domain swapping in homooligomeric proteins and its functional significance.

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Structures of the complexes of a potent anti-HIV protein cyanovirin-N and high mannose oligosaccharides

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A mechanism of regulating transmembrane potassium flux through a ligand-mediated conformational switch

1 reference

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28 July 2018

3D domain swapping: as domains continue to swap

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901629

28 July 2018

3D domain swapping, protein oligomerization, and amyloid formation.

1 reference

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28 July 2018

Control of domain swapping in bovine odorant-binding protein

1 reference

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28 July 2018

Protein folding and three-dimensional domain swapping: a strained relationship?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901629

28 July 2018

The structure of Escherichia coli cytosine deaminase

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28 July 2018

The crystal structures of Apo and complexed Saccharomyces cerevisiae GNA1 shed light on the catalytic mechanism of an amino-sugar N-acetyltransferase

1 reference

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28 July 2018

Dimerization and domain swapping in G-protein-coupled receptors: a computational study

1 reference

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28 July 2018

Recent changes to RasMol, recombining the variants

1 reference

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28 July 2018

Gene ontology: tool for the unification of biology

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28 July 2018

Binding of alkylurea inhibitors to epoxide hydrolase implicates active site tyrosines in substrate activation

1 reference

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28 July 2018

Domain swapping used to investigate the mechanism of protein kinase B regulation by 3-phosphoinositide-dependent protein kinase 1 and Ser473 kinase

1 reference

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Binding of a substrate analog to a domain swapping protein: X-ray structure of the complex of bovine seminal ribonuclease with uridylyl(2′,5′)adenosine

1 reference

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Engineering an intertwined form of CD2 for stability and assembly

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JOY: protein sequence-structure representation and analysis.

1 reference

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The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution

1 reference

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Crystal structure of human glyoxalase I_evidence for gene duplication and 3D domain swapping

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3D domain swapping: a mechanism for oligomer assembly

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Domain swapping: entangling alliances between proteins

1 reference

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Odorant-binding proteins

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Novel subunit-subunit interactions in the structure of glutamine synthetase

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901629

29 October 2018

Molecular dynamics simulations to investigate the domain swapping mechanism of human cystatin C.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901629

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1 reference

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1 reference

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based on heuristic

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The evolving role of 3D domain swapping in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20634983

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bi-functional activities of chimeric lysozymes constructed by domain swapping between bacteriophage T7 and K11 lysozymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20634983

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4137/BBI.S4464

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Europe PubMed Central

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7 February 2020

PMC publication ID

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Europe PubMed Central

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7 February 2020

PubMed publication ID

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Europe PubMed Central

PMC publication ID

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7 February 2020

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