Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease Displays Persistence of Multiple env Subpopulations Consistent with Neutrality (Q33988303)

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scientific article published on August 2, 2011

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English	Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease Displays Persistence of Multiple env Subpopulations Consistent with Neutrality	scientific article published on August 2, 2011

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutrality (English)

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Europe PubMed Central

PubMed publication ID

30 July 2017

Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease Displays Persistence of Multiple env Subpopulations Consistent with Neutrality (English)

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10.1371/JOURNAL.PONE.0021747

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0021747

9 December 2024

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9 December 2024

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Thomas Leitner

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Europe PubMed Central

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30 July 2017

5

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Jan Albert

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Europe PubMed Central

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30 July 2017

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Helena Skar

1

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Europe PubMed Central

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30 July 2017

Karin Wilbe Ramsay

3

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30 July 2017

Annette Alaeus

4

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Europe PubMed Central

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30 July 2017

Ryan N. Gutenkunst

2

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9 December 2024

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2 August 2011

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30 July 2017

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9 December 2024

https://europepmc.org/articles/PMC3149046

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Europe PubMed Central

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21829600

9 December 2024

https://europepmc.org/articles/PMC3149046?pdf=render

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21829600

9 December 2024

http://dx.plos.org/10.1371/journal.pone.0021747

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10.1371/JOURNAL.PONE.0021747

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0021747

9 December 2024

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Europe PubMed Central

PubMed publication ID

30 July 2017

6

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Europe PubMed Central

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30 July 2017

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Europe PubMed Central

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30 July 2017

e21747

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Europe PubMed Central

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30 July 2017

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Creative Commons CC0 License

2 August 2011

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0 references

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1 reference

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Genetic composition of replication competent clonal HIV-1 variants isolated from peripheral blood mononuclear cells (PBMC), HIV-1 proviral DNA from PBMC and HIV-1 RNA in serum in the course of HIV-1 infection

1 reference

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Recombination rate and selection strength in HIV intra-patient evolution

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Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection

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Lack of in vivo compartmentalization among HIV-1 infected naïve and memory CD4+ T cell subsets

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Cross-sectional characterization of HIV-1 env compartmentalization in cerebrospinal fluid over the full disease course

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Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response

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Genetic drift of HIV populations in culture

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Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression

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An exploratory algorithm to identify intra-host recombinant viral sequences

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The generation and maintenance of genetic variation by frequency-dependent selection: constructing polymorphisms under the pairwise interaction model

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Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection

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Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

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BEAST: Bayesian evolutionary analysis by sampling trees

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Frequency-dependent selection in a periodic environment

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5 July 2018

Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases

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Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

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Stochastic or deterministic: what is the effective population size of HIV-1?

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Human immunodeficiency virus type 1 V1-V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivity

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Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.

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Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection

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Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution

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Application of phylogenetic networks in evolutionary studies

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HyPhy: hypothesis testing using phylogenies

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Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection

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Unselected mutations in the human immunodeficiency virus type 1 genome are mostly nonsynonymous and often deleterious

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Neighbor-net: an agglomerative method for the construction of phylogenetic networks

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HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation

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Antibody neutralization and escape by HIV-1

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Rapid evolution of the neutralizing antibody response to HIV type 1 infection

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Sequence diversity of the capsid gene and the nonstructural gene NS2B of dengue-3 virus in vivo

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The functional CD8 T cell response to HIV becomes type-specific in progressive disease

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Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection

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Hitchhiking under positive Darwinian selection

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Frequency-dependent selection in human immunodeficiency virus type 1.

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

19

1 reference

10.1371/JOURNAL.PONE.0021747

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0021747

9 December 2024

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10.1371/JOURNAL.PONE.0021747

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

2011PLoSO...621747S

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

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