RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries (Q33966769)

30 July 2017

title

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries (English)

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30 July 2017

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30 July 2017

Thomas Tuschl

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30 July 2017

Neil Renwick

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30 July 2017

Miguel Brown

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30 July 2017

Aleksandra Mihailović

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30 July 2017

Daniel Holoch

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30 July 2017

Carolina Lin

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30 July 2017

John T G Pena

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30 July 2017

Jeffrey D Nusbaum

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30 July 2017

Pavel Morozov

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30 July 2017

Janos Ludwig

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30 July 2017

Tolulope Ojo

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30 July 2017

Shujun Luo

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30 July 2017

Gary Schroth

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30 July 2017

language of work or name

English

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publication date

20 July 2011

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

1697-1712

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MicroRNA sequence and expression analysis in breast tumors by deep sequencing

30 July 2017

cites work

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Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.

5 July 2018

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Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma

5 July 2018

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5 July 2018

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5 July 2018

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MicroRNA control of signal transduction

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Design of 240,000 orthogonal 25mer DNA barcode probes

5 July 2018

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5 July 2018

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5 July 2018

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Loss of miRNA biogenesis induces p19Arf-p53 signaling and senescence in primary cells

5 July 2018

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Molecular crowding effects on structure and stability of DNA.

5 July 2018

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The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members

5 July 2018

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Small non-coding RNAs in animal development

5 July 2018

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DNA and RNA ligases: structural variations and shared mechanisms

5 July 2018

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Real-time PCR quantification of precursor and mature microRNA.

5 July 2018

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Computational analysis of small RNA cloning data

5 July 2018

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Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

5 July 2018

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Activation of DNA strand exchange by cationic comb-type copolymers: effect of cationic moieties of the copolymers.

5 July 2018

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A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

5 July 2018

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A mammalian microRNA expression atlas based on small RNA library sequencing

5 July 2018

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Impaired microRNA processing enhances cellular transformation and tumorigenesis

5 July 2018

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Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression

5 July 2018

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Distinct populations of primary and secondary effectors during RNAi in C. elegans

5 July 2018

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Direct and sensitive miRNA profiling from low-input total RNA.

5 July 2018

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A distinct small RNA pathway silences selfish genetic elements in the germline

5 July 2018

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Prediction of RNA secondary structure by free energy minimization

5 July 2018

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miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting

5 July 2018

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Silencing of microRNAs in vivo with 'antagomirs'

5 July 2018

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Identification and characterization of small RNAs involved in RNA silencing

5 July 2018

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Identification of microRNAs of the herpesvirus family

5 July 2018

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

5 July 2018

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Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties

5 July 2018

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Structure and mechanism of RNA ligase

5 July 2018

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Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1.

5 July 2018

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Vienna RNA secondary structure server

5 July 2018

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Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Incorporation of terminal phosphorothioates into oligonucleotides.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Purification and properties of bacteriophage T4-induced RNA ligase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

T4-induced RNA ligase joins single-stranded oligoribonucleotides

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

3'-terminal labelling of RNA with T4 RNA ligase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Dinucleoside pyrophosphate are substrates for T4-induced RNA ligase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Limitations and possibilities of small RNA digital gene expression profiling

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation

29 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Cationic comb-type copolymers for DNA analysis

29 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Structure-function analysis of T4 RNA ligase 2.

29 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3162335

Argonautes and company: sailing against the wind

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21775473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular biology. miRNAs in neurodegeneration

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21775473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Terminal transferase: use of the tailing of DNA and for in vitro mutagenesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21775473

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2799511

1 reference

30 July 2017

1 reference

30 July 2017

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