Differential stability of DNA crossovers in solution mediated by divalent cations (Q33959446)

30 July 2017

title

Differential stability of DNA crossovers in solution mediated by divalent cations (English)

1 reference

30 July 2017

Péter Várnai

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30 July 2017

Youri Timsit

series ordinal

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30 July 2017

language of work or name

English

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publication date

9 March 2010

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30 July 2017

published in

Nucleic Acids Research

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

4163-4172

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Creative Commons Attribution-NonCommercial 2.5 Generic

30 July 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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Structure of the '30 nm' chromatin fibre: a key role for the linker histone

5 July 2018

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EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure

5 July 2018

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X-ray structure of a tetranucleosome and its implications for the chromatin fibre

5 July 2018

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Nucleosome arrays reveal the two-start organization of the chromatin fiber

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Interhelical spacing in liquid crystalline spermine and spermidine-DNA precipitates

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The contribution of metal ions to the structural stability of the large ribosomal subunit

5 July 2018

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Information content and complexity in the high-order organization of DNA.

5 July 2018

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Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases.

5 July 2018

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Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases

5 July 2018

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Intersegmental interactions in supercoiled DNA: atomic force microscope study

5 July 2018

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DNA-dependent divalent cation binding in the nucleosome core particle

5 July 2018

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

5 July 2018

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Brownian-dynamics simulations of metal-ion binding to four-way junctions

5 July 2018

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Structures of helical junctions in nucleic acids

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Is counterion delocalization responsible for collapse in RNA folding?

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions

5 July 2018

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Crystal structure of a DNA Holliday junction

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Tertiary Motifs in RNA Structure and Folding

5 July 2018

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Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets

5 July 2018

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Electrostatic interaction between helical macromolecules in dense aggregates: an impetus for DNA poly- and meso-morphism

5 July 2018

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Binding to four-way junction DNA: a common property of architectural proteins?

5 July 2018

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Effect of cytosine methylation on DNA-DNA recognition at CpG steps

5 July 2018

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Sequence-dependent crossed helix packing in the crystal structure of a B -DNA decamer yields a detailed model for the holliday junction 1 1Edited by K. Nagai

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Cruciform structures and functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

5 July 2018

1 reference

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Chirality of DNA trefoils: implications in intramolecular synapsis of distant DNA segments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Visualization of supercoiled DNA with atomic force microscopy in situ

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

VMD: visual molecular dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

DNA self-fitting: the double helix directs the geometry of its supramolecular assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Conformational and thermodynamic properties of supercoiled DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Modeling of long-range electrostatic interactions in DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Higher-order nucleoprotein complexes in transcription: analogies with site-specific recombination.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Electrostatic mechanism of nucleosome spacing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Unusual helical packing in crystals of DNA bearing a mutation hot spot

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Direct visualization of supercoiled DNA molecules in solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Nucleoprotein structures initiating DNA replication, transcription, and site-specific recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Groove-backbone interaction in B-DNA. Implication for DNA condensation and recombination.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Trefoil knotting revealed by molecular dynamics simulations of supercoiled DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

5 July 2018

Crystallization of DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Inter-DNA attraction mediated by divalent counterions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Self-assembly of double-stranded DNA molecules at nanomolar concentrations

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Measuring inter-DNA potentials in solution.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Single-molecule analysis of DNA uncoiling by a type II topoisomerase.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Left-handed DNA crossovers. Implications for DNA-DNA recognition and structural alterations.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896531

Direct observation of azimuthal correlations between DNA in hydrated aggregates

29 October 2018

1 reference

12 December 2020

1 reference

12 December 2020

Interactions of highly charged colloidal cylinders with applications to double-stranded

1 reference

12 December 2020

Inter-DNA electrostatics from explicit solvent molecular dynamics simulations

1 reference

12 December 2020

Effect of Mono- and Multivalent Salts on Angle-Dependent Attractions Between Charged Rods

1 reference

12 December 2020

The ion core in RNA folding

1 reference

12 December 2020

X-ray diffraction studies on cation-collapsed DNA

1 reference

12 December 2020

Molecular dynamics simulation of multivalent-ion mediated attraction between DNA molecules

1 reference

12 December 2020

Physicochemical studies of the folding of the 100 A nucleosome filament into the 300 A filament. Cation dependence

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ150

1 reference

release_7azsyjlyabdu5hvzflcax2b2aa

30 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7azsyjlyabdu5hvzflcax2b2aa

24 November 2022

mapped directly with Wikidata item

PMC publication ID

2896531

1 reference

30 July 2017

1 reference