Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts. (Q33957723)

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English	Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts.	scientific article

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title

Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts (English)

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Iain William Mattaj

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4

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Cindy L. Will

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2

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Reinhard Georg Lührmann

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R Lührmann

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author name string

V Ségault

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1

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M Polycarpou-Schwarz

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3

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C Branlant

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5

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language of work or name

English

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publication date

1 April 1999

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published in

Molecular and Cellular Biology

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12 November 2019

volume

19

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4

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2782-2790

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12 November 2019

cites work

The human U5-220kD protein (hPrp8) forms a stable RNA-free complex with several U5-specific proteins, including an RNA unwindase, a homologue of ribosomal elongation factor EF-2, and a novel WD-40 protein

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PubMed Central

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RNA unwinding in U4/U6 snRNPs requires ATP hydrolysis and the DEIH-box splicing factor Brr2

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5 July 2018

The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro

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5 July 2018

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Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing

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5 July 2018

Evidence that U5 snRNP recognizes the 3' splice site for catalytic step II in mammals

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5 July 2018

Antisense oligonucleotide binding to U5 snRNP induces a conformational change that exposes the conserved loop of U5 snRNA

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5 July 2018

An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2

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Mutagenesis of the yeast gene PRP8 reveals domains governing the specificity and fidelity of 3' splice site selection

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Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly

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5 July 2018

The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases

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5 July 2018

The canonical GU dinucleotide at the 5' splice site is recognized by p220 of the U5 snRNP within the spliceosome

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snRNA interactions at 5' and 3' splice sites monitored by photoactivated crosslinking in yeast spliceosomes

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5 July 2018

The determinants for Sm protein binding to Xenopus U1 and U5 snRNAs are complex and non-identical.

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Evidence that the 60-kDa protein of 17S U2 small nuclear ribonucleoprotein is immunologically and functionally related to the yeast PRP9 splicing factor and is required for the efficient formation of prespliceosomes

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A 69-kD protein that associates reversibly with the Sm core domain of several spliceosomal snRNP species.

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Mutations in the conserved loop of human U5 snRNA generate use of novel cryptic 5' splice sites in vivo

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5 July 2018

Architecture of the U5 small nuclear RNA

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Dynamic association of proteins with the pre-mRNA branch region

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Extensive interactions of PRP8 protein with the 5' and 3' splice sites during splicing suggest a role in stabilization of exon alignment by U5 snRNA.

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5 July 2018

In vitro reconstitution of mammalian U2 and U5 snRNPs active in splicing: Sm proteins are functionally interchangeable and are essential for the formation of functional U2 and U5 snRNPs

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5 July 2018

Dynamic RNA-RNA interactions in the spliceosome

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5 July 2018

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

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U2 RNA shares a structural domain with U1, U4, and U5 RNAs

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5 July 2018

The nuclear 5S RNAs from chicken, rat and man. US RNAs are encoded by multiple genes

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5 July 2018

Spliceosomal snRNAs

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Cloning of the RNA8 gene of Saccharomyces cerevisiae, detection of the RNA8 protein, and demonstration that it is essential for nuclear pre-mRNA splicing

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5 July 2018

U5 small nuclear ribonucleoprotein: RNA structure analysis and ATP-dependent interaction with U4/U6

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5 July 2018

Conservation between yeast and man of a protein associated with U5 small nuclear ribonucleoprotein

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5 July 2018

Phylogenetic conservation of modified nucleotides in the terminal loop 1 of the spliceosomal U5 snRNA

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A novel role for a U5 snRNP protein in 3' splice site selection.

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Protein-RNA interactions in 20S U5 snRNPs

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based on heuristic

inferred from PubMed ID database lookup

Mutations in yeast U5 snRNA alter the specificity of 5' splice-site cleavage

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vitro reconstitution of U1 and U2 snRNPs from isolated proteins and snRNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-specific cross-linking of mammalian U5 snRNP to the 5' splice site before the first step of pre-mRNA splicing

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The U5 and U6 small nuclear RNAs as active site components of the spliceosome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein-RNA interactions in the U5 snRNP of Saccharomyces cerevisiae

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The invariant U5 snRNA loop 1 sequence is dispensable for the first catalytic step of pre-mRNA splicing in yeast

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a yeast snRNP protein and detection of snRNP-snRNP interactions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10082544

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/MCB.19.4.2782

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stated in

Europe PubMed Central

PMC publication ID

84071

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10082544%20AND%20SRC:MED&resulttype=core&format=json

retrieved

12 November 2019

PMC publication ID

84071

1 reference

stated in

Europe PubMed Central

PMC publication ID

84071

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10082544%20AND%20SRC:MED&resulttype=core&format=json

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12 November 2019

PubMed publication ID

10082544

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PMC publication ID

84071

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10082544%20AND%20SRC:MED&resulttype=core&format=json

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