Genomic and protein structural maps of adaptive evolution of human influenza A virus to increased virulence in the mouse (Q33955342)

30 July 2017

title

Genomic and protein structural maps of adaptive evolution of human influenza A virus to increased virulence in the mouse (English)

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30 July 2017

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influenza A virus

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Elodie Ghedin

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30 July 2017

Rebecca A Halpin

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30 July 2017

Lorne Babiuk

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30 July 2017

Jayati Bera

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30 July 2017

Alex Boyne

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30 July 2017

Jihui Ping

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30 July 2017

Liya Keleta

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30 July 2017

Nicole E Forbes

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30 July 2017

Samar Dankar

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30 July 2017

William Stecho

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30 July 2017

Shaun Tyler

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30 July 2017

Yan Zhou

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30 July 2017

Hana Weingartl

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30 July 2017

Jessicah Hostetler

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30 July 2017

Nadia B Fedorova

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30 July 2017

Katie Proudfoot

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30 July 2017

Dan A Katzel

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30 July 2017

Tim B Stockwell

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30 July 2017

David J Spiro

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30 July 2017

Earl G Brown

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30 July 2017

language of work or name

English

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publication date

30 June 2011

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

e21740

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Creative Commons CC0 License

30 July 2017

start time

30 June 2011

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April 2022 Public Data File from Crossref

copyrighted, dedicated to the public domain by copyright holder

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cites work

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5 July 2018

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5 July 2018

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5 July 2018

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Cellular networks involved in the influenza virus life cycle

5 July 2018

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Influenza A virus polymerase: structural insights into replication and host adaptation mechanisms

5 July 2018

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5 July 2018

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Inefficient control of host gene expression by the 2009 pandemic H1N1 influenza A virus NS1 protein

5 July 2018

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Introduction of virulence markers in PB2 of pandemic swine-origin influenza virus does not result in enhanced virulence or transmission.

5 July 2018

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5 July 2018

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A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection

5 July 2018

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The early diversification of influenza A/H1N1pdm.

5 July 2018

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Adaptive strategies of the influenza virus polymerase for replication in humans

5 July 2018

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The polymerase acidic protein gene of influenza a virus contributes to pathogenicity in a mouse model

5 July 2018

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In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses

5 July 2018

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Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses.

5 July 2018

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Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans

5 July 2018

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Adaptive mutations resulting in enhanced polymerase activity contribute to high virulence of influenza A virus in mice

5 July 2018

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Mechanism of drug inhibition and drug resistance of influenza A M2 channel

5 July 2018

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5 July 2018

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Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future

5 July 2018

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Influenza a virus polymerase is an integral component of the CPSF30-NS1A protein complex in infected cells

5 July 2018

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Adaptation of human influenza H3N2 virus in a mouse pneumonitis model: insights into viral virulence, tissue tropism and host pathogenesis.

5 July 2018

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Experimental evolution of human influenza virus H3 hemagglutinin in the mouse lung identifies adaptive regions in HA1 and HA2.

5 July 2018

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Compatibility among polymerase subunit proteins is a restricting factor in reassortment between equine H7N7 and human H3N2 influenza viruses

5 July 2018

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The multifunctional NS1 protein of influenza A viruses

5 July 2018

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Host restriction of avian influenza viruses at the level of the ribonucleoproteins.

5 July 2018

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Evidence of expanded host range and mammalian-associated genetic changes in a duck H9N2 influenza virus following adaptation in quail and chickens.

5 July 2018

1 reference

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Structural basis for suppression of a host antiviral response by influenza A virus

5 July 2018

1 reference

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The structural basis for an essential subunit interaction in influenza virus RNA polymerase

5 July 2018

1 reference

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Progress in identifying virulence determinants of the 1918 H1N1 and the Southeast Asian H5N1 influenza A viruses.

5 July 2018

1 reference

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The structural basis for cap binding by influenza virus polymerase subunit PB2

5 July 2018

1 reference

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The genomic and epidemiological dynamics of human influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

A new influenza virus virulence determinant: the NS1 protein four C-terminal residues modulate pathogenicity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Influenza A (H1N1) virus resistance to cyanovirin-N arises naturally during adaptation to mice and by passage in cell culture in the presence of the inhibitor

5 July 2018

1 reference

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Interaction of polymerase subunit PB2 and NP with importin alpha1 is a determinant of host range of influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Structure and mechanism of the M2 proton channel of influenza A virus

5 July 2018

1 reference

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Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

A single mutation in the PB1-F2 of H5N1 (HK/97) and 1918 influenza A viruses contributes to increased virulence

5 July 2018

1 reference

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Surveillance of resistance to adamantanes among influenza A(H3N2) and A(H1N1) viruses isolated worldwide

5 July 2018

1 reference

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Differential polymerase activity in avian and mammalian cells determines host range of influenza virus

5 July 2018

1 reference

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The H5N1 influenza virus NS genes selected after 1998 enhance virus replication in mammalian cells

5 July 2018

1 reference

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Changing epidemiology and ecology of highly pathogenic avian H5N1 influenza viruses.

5 July 2018

1 reference

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Multiple anti-interferon actions of the influenza A virus NS1 protein

5 July 2018

1 reference

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Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit

5 July 2018

1 reference

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Adaptation of an H7N7 equine influenza A virus in mice

5 July 2018

1 reference

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Stochastic processes are key determinants of short-term evolution in influenza a virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Nuclear traffic of influenza virus proteins and ribonucleoprotein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The role of compensatory mutations in the emergence of drug resistance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Functional association between viral and cellular transcription during influenza virus infection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Influenza virus receptor specificity and cell tropism in mouse and human airway epithelial cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Host range restriction and pathogenicity in the context of influenza pandemic.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Characterization of the reconstructed 1918 Spanish influenza pandemic virus

5 July 2018

1 reference

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Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Parallel genotypic adaptation: when evolution repeats itself

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The genetic theory of adaptation: a brief history

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications

5 July 2018

1 reference

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Novel origin of the 1918 pandemic influenza virus nucleoprotein gene.

5 July 2018

1 reference

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A computer program for Spearman-Kärber and probit analysis of psychometric function data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Structure of the uncleaved human H1 hemagglutinin from the extinct 1918 influenza virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Evolutional analysis of human influenza A virus N2 neuraminidase genes based on the transition of the low-pH stability of sialidase activity.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Relationship of pre-1918 avian influenza HA and NP sequences to subsequent avian influenza strains.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

A molecular mechanism for the low‐pH stability of sialidase activity of influenza A virus N2 neuraminidases1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Neurovirulence in mice of H5N1 influenza virus genotypes isolated from Hong Kong poultry in 2001

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Lethal H5N1 influenza viruses escape host anti-viral cytokine responses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

MULTIFACTORIAL GENETICSUNDERSTANDING QUANTITATIVE GENETIC VARIATION

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

PA subunit from influenza virus polymerase complex interacts with a cellular protein with homology to a family of transcriptional activators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Duck and human pandemic influenza A viruses retain sialidase activity under low pH conditions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Pattern of mutation in the genome of influenza A virus on adaptation to increased virulence in the mouse lung: identification of functional themes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

In vitro dissection of the membrane and RNP binding activities of influenza virus M1 protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Experimental evolution recapitulates natural evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Molecular correlates of influenza A H5N1 virus pathogenesis in mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

5 July 2018

Influenza virus genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Interaction of influenza virus polymerase with viral RNA in the 'corkscrew' conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Association of influenza virus matrix protein with ribonucleoproteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Different trajectories of parallel evolution during viral adaptation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Origin and evolution of the 1918 "Spanish" influenza virus hemagglutinin gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The influenza virus NEP (NS2 protein) mediates the nuclear export of viral ribonucleoproteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Exceptional Convergent Evolution in a Virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Virulence of influenza A virus for mouse lung

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Mutations in the hemagglutinin and matrix genes of a virulent influenza virus variant, A/FM/1/47-MA, control different stages in pathogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The influenza virus variant A/FM/1/47-MA possesses single amino acid replacements in the hemagglutinin, controlling virulence, and in the matrix protein, controlling virulence as well as growth.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Nucleus-targeting domain of the matrix protein (M1) of influenza virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Biological properties of a hemagglutinin mutant of influenza virus selected by host cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Antigenic structure of influenza virus haemagglutinin defined by hybridoma antibodies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Influenza virus M2 protein is an integral membrane protein expressed on the infected-cell surface

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The receptor-binding and membrane-fusion properties of influenza virus variants selected using anti-haemagglutinin monoclonal antibodies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Measurement of the mutation rates of animal viruses: influenza A virus and poliovirus type 1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Structural domains and organizational conformation involved in the sorting and transport of influenza virus transmembrane proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Transcription-inhibition and RNA-binding domains of influenza A virus matrix protein mapped with anti-idiotypic antibodies and synthetic peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Functional and antigenic domains of the matrix (M1) protein of influenza A virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Increased virulence of a mouse-adapted variant of influenza A/FM/1/47 virus is controlled by mutations in genome segments 4, 5, 7, and 8.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Amantadine selection of a mutant influenza virus containing an acid-stable hemagglutinin glycoprotein: evidence for virus-specific regulation of the pH of glycoprotein transport vesicles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Evolution and ecology of influenza A viruses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Heterogeneity of the mutation rates of influenza A viruses: isolation of mutator mutants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

Host species barriers to influenza virus infections

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Evidence of an absence: the genetic origins of the 1918 pandemic influenza virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Emergence of H274Y oseltamivir-resistant A(H1N1) influenza viruses in Japan during the 2008-2009 season

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Genetic analysis of mouse-adapted influenza A virus identifies roles for the NA, PB1, and PB2 genes in virulence

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Single mutation at the amino acid position 627 of PB2 that leads to increased virulence of an H5N1 avian influenza virus during adaptation in mice can be compensated by multiple mutations at other sites of PB2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Multiple amino acid substitutions are involved in the adaptation of H9N2 avian influenza virus to mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Amino acid residues in the N-terminal region of the PA subunit of influenza A virus RNA polymerase play a critical role in protein stability, endonuclease activity, cap binding, and virion RNA promoter binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Pneumo- and neurotropism of avian origin Italian highly pathogenic avian influenza H7N1 isolates in experimentally infected mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

Immunoglobulin mimicry by Hepatitis C Virus envelope protein E2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021740

The mouse model for influenza

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128085

The probability of parallel evolution

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21738783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0021740

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference