Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives (Q33942319)

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9 March 2020

title

Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives (English)

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9 March 2020

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9 March 2020

George Coupland

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9 March 2020

Outi Savolainen

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9 March 2020

Sara Bergonzi

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9 March 2020

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Maria C Albani

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9 March 2020

Ulla Kemi

series ordinal

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9 March 2020

language of work or name

English

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publication date

17 July 2014

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9 March 2020

published in

Nature Communications

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9 March 2020

volume

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9 March 2020

page(s)

4457

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Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

9 March 2020

start time

17 July 2014

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April 2022 Public Data File from Crossref

copyrighted

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cites work

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

PEP1 of Arabis alpina is encoded by two overlapping genes that contribute to natural genetic variation in perennial flowering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

The genetic basis of flowering responses to seasonal cues.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Rapid turnover of long noncoding RNAs and the evolution of gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Flowering time control: another window to the connection between antisense RNA and chromatin.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

A Polycomb-based switch underlying quantitative epigenetic memory

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Structural and functional differences in the long non-coding RNA hotair in mouse and human

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

The FRIGIDA Complex Activates Transcription of FLC, a Strong Flowering Repressor in Arabidopsis, by Recruiting Chromatin Modification Factors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Long noncoding RNA as modular scaffold of histone modification complexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Different regulatory regions are required for the vernalization-induced repression of FLOWERING LOCUS C and for the epigenetic maintenance of repression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Control of flowering time by FLC orthologues in Brassica napus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

VISTA : visualizing global DNA sequence alignments of arbitrary length

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Arabidopsis mutants showing an altered response to vernalization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4109010

Vernalization-induced trimethylation of histone H3 lysine 27 at FLC is not maintained in mitotically quiescent cells

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

The VERNALIZATION 2 gene mediates the epigenetic regulation of vernalization in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

The spen family protein FPA controls alternative cleavage and polyadenylation of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

PEP1 regulates perennial flowering in Arabis alpina

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Vernalization-induced repression of FLOWERING LOCUS C stimulates flowering in Sinapis alba and enhances plant responsiveness to photoperiod

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Role of vernalization and of duplicated FLOWERING LOCUS C in the perennial Arabidopsis lyrata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Molecular basis of age-dependent vernalization in Cardamine flexuosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

cis-Regulatory elements and chromatin state coordinately control temporal and spatial expression of FLOWERING LOCUS T in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

FRIGIDA delays flowering in Arabidopsis via a cotranscriptional mechanism involving direct interaction with the nuclear cap-binding complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Effects of genetic perturbation on seasonal life history plasticity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

GATA: a graphic alignment tool for comparative sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

BAC‐recombineering for studying plant gene regulation: developmental control and cellular localization of SnRK1 kinase subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5457

Differential regulation of FLOWERING LOCUS C expression by vernalization in cabbage and Arabidopsis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25030056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Tandem duplication of the FLC locus and the origin of a new gene in Arabidopsis related species and their functional implications in allopolyploids

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25030056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The timing of flowering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25030056

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS5457

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030056%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 March 2020

ADS bibcode

2014NatCo...5.4457C

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0 references

1 reference

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9 March 2020

PubMed publication ID

25030056

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030056%20AND%20SRC:MED&resulttype=core&format=json