Microarray-based RNA profiling of breast cancer: batch effect removal improves cross-platform consistency. (Q33914600)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

Microarray-based RNA profiling of breast cancer: batch effect removal improves cross-platform consistency (English)

1 reference

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12 March 2020

1 reference

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12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Mads Thomassen

1 reference

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12 March 2020

Kristina P Sørensen

1 reference

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12 March 2020

language of work or name

English

0 references

publication date

3 July 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

BioMed Research International

12 March 2020

published in

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12 March 2020

volume

2014

1 reference

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12 March 2020

page(s)

651751

1 reference

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Creative Commons Attribution 3.0 Unported

12 March 2020

start time

1 January 2014

1 reference

April 2022 Public Data File from Crossref

copyrighted

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April 2022 Public Data File from Crossref

describes a project that uses

limma

object named as

R package limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4101981

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Classifications within molecular subtypes enables identification of BRCA1/BRCA2 mutation carriers by RNA tumor profiling

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Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

5 July 2018

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A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

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5 July 2018

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Gene expression profiling of formalin-fixed, paraffin-embedded familial breast tumours using the whole genome-DASL assay

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5 July 2018

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A comparison of background correction methods for two-colour microarrays

5 July 2018

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Review of the literature examining the correlation among DNA microarray technologies

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Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions

5 July 2018

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The molecular portraits of breast tumors are conserved across microarray platforms

5 July 2018

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Adjusting batch effects in microarray expression data using empirical Bayes methods

5 July 2018

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Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

5 July 2018

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Conservation of breast cancer molecular subtypes and transcriptional patterns of tumor progression across distinct ethnic populations

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Repeated observation of breast tumor subtypes in independent gene expression data sets

5 July 2018

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101981

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

5 July 2018

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5 July 2018

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5 July 2018

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Molecular portraits of human breast tumours

5 July 2018

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5 July 2018

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Spotting and validation of a genome wide oligonucleotide chip with duplicate measurement of each gene

21 January 2018

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https://api.crossref.org/works/10.1155%2F2014%2F651751

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

21 January 2018

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21 January 2018

Identifiers

DOI

10.1155/2014/651751

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25101291

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25101291%20AND%20SRC:MED&resulttype=core&format=json