A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility (Q33914037)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

protein evolution

0 references

object named as

Julian Echave

4

0 references

author name string

Tsun-Tsao Huang

1

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

María Laura del Valle Marcos

2

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Jenn-Kang Hwang

3

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

publication date

9 April 2014

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

78

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Evaluation of Protein Elastic Network Models Based on an Analysis of Collective Motions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Structural dynamics flexibility informs function and evolution at a proteome scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Comparing proteins by their internal dynamics: exploring structure-function relationships beyond static structural alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Elastic network models: theoretical and empirical foundations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Sequence evolution correlates with structural dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Biophysical and structural considerations for protein sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

An evaluation of R2 as an inadequate measure for nonlinear models in pharmacological and biochemical research: a Monte Carlo approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Signatures of protein biophysics in coding sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Global dynamics of proteins: bridging between structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Structural and functional constraints in the evolution of protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Protein elastic network models and the ranges of cooperativity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Deriving protein dynamical properties from weighted protein contact number.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Packing regularities in biological structures relate to their dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

An integrated view of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Protein sequence entropy is closely related to packing density and hydrophobicity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

The pattern of amino acid replacements in alpha/beta-barrels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Flexibility and packing in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Anisotropy of fluctuation dynamics of proteins with an elastic network model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101840

28 July 2018

Protein evolution constraints and model-based techniques to study them

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

The interface of protein structure, protein biophysics, and molecular evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

The relationship between relative solvent accessibility and evolutionary rate in protein evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

Evolutionary information hidden in a single protein structure

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-14-78

21 January 2018

Structural determinants of protein evolution are context-sensitive at the residue level

1 reference

https://pubmed.ncbi.nlm.nih.gov/24716445

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AIC model selection using Akaike weights

1 reference

https://pubmed.ncbi.nlm.nih.gov/24716445

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A perturbative view of protein structural variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/24716445

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary conservation of protein vibrational dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/24716445

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Why are the low-energy protein normal modes evolutionarily conserved?

1 reference

20 August 2023

https://opencitations.net/index/coci/api/v1/citations/10.1351/PAC-CON-12-02-15

Identifiers

10.1186/1471-2148-14-78

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-14-78

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33914037&oldid=2195984027"