Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor. (Q33887834)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9384590%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

title

Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor (English)

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7 November 2019

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7 November 2019

Wong J

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7 November 2019

Levi BZ

series ordinal

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7 November 2019

Shi YB

series ordinal

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7 November 2019

Wolffe AP

series ordinal

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7 November 2019

language of work or name

English

0 references

publication date

1 December 1997

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7 November 2019

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7 November 2019

volume

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7 November 2019

issue

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7 November 2019

page(s)

7130-7145

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Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation

7 November 2019

cites work

1 reference

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Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone-dependent transcriptional repression

5 July 2018

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Nuclear receptor repression mediated by a complex containing SMRT, mSin3A, and histone deacetylase

5 July 2018

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A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression

5 July 2018

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5 July 2018

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Where is the globular domain of linker histone located on the nucleosome?

5 July 2018

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The transcriptional coactivators p300 and CBP are histone acetyltransferases

5 July 2018

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Linker histone H1 regulates specific gene expression but not global transcription in vivo

5 July 2018

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5 July 2018

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Evidence for a shared structural role for HMG1 and linker histones B4 and H1 in organizing chromatin

5 July 2018

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The amino-terminal tails of the core histones and the translational position of the TATA box determine TBP/TFIIA association with nucleosomal DNA.

5 July 2018

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A nucleosome-dependent static loop potentiates estrogen-regulated transcription from the Xenopus vitellogenin B1 promoter in vitro

5 July 2018

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Replication-coupled chromatin assembly is required for the repression of basal transcription in vivo

5 July 2018

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Crystal structure of globular domain of histone H5 and its implications for nucleosome binding

5 July 2018

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Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation.

5 July 2018

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Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome

5 July 2018

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Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5

5 July 2018

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Transcriptional repression by nucleosomes but not H1 in reconstituted preblastoderm Drosophila chromatin

5 July 2018

1 reference

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Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA

5 July 2018

1 reference

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Architectural variations of inducible eukaryotic promoters: preset and remodeling chromatin structures

5 July 2018

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The establishment of active promoters in chromatin

5 July 2018

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Differential recognition of target genes by nuclear receptor monomers, dimers, and heterodimers

5 July 2018

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Nucleosome positioning and modification: chromatin structures that potentiate transcription

5 July 2018

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Contacts of the globular domain of histone H5 and core histones with DNA in a "chromatosome".

5 July 2018

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Characterization of the ligand-dependent transactivation domain of thyroid hormone receptor

5 July 2018

1 reference

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Transcriptional repression of Xenopus TR beta gene is mediated by a thyroid hormone response element located near the start site.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Specific regulation of Xenopus chromosomal 5S rRNA gene transcription in vivo by histone H1.

5 July 2018

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Differential repression of transcription factor binding by histone H1 is regulated by the core histone amino termini.

5 July 2018

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Nucleosomal anatomy--where are the histones?

5 July 2018

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Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo

5 July 2018

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Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames

5 July 2018

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A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones

5 July 2018

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Accessibility of a glucocorticoid response element in a nucleosome depends on its rotational positioning

5 July 2018

1 reference

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A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor

5 July 2018

1 reference

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Nucleosomes reconstituted in vitro on mouse mammary tumor virus B region DNA occupy multiple translational and rotational frames

5 July 2018

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The structure of histone H1 and its location in chromatin

5 July 2018

1 reference

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Nucleosome reconstitution on plasmid-inserted poly(dA) . poly(dT)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

DNA bending and its relation to nucleosome positioning.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Principles of sequence-dependent flexure of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Specific glucocorticoid receptor binding to DNA reconstituted in a nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Artificial nucleosome positioning sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Initiation of transcription on nucleosomal templates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Histone H1 represses transcription from minichromosomes assembled in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Nucleosome positioning can affect the function of a cis-acting DNA element in vivo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro

5 July 2018

1 reference

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The structure of DNA in a nucleosome

5 July 2018

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Nucleosome positioning modulates accessibility of regulatory proteins to the mouse mammary tumor virus promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Chromatosome positioning on assembled long chromatin. Linker histones affect nucleosome placement on 5 S rDNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Nucleosome positioning: occurrence, mechanisms, and functional consequences

5 July 2018

1 reference

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The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

A functional role for nucleosomes in the repression of a yeast promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter.

5 July 2018

1 reference

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Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome

5 July 2018

1 reference

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Nucleosome arrays inhibit both initiation and elongation of transcripts by bacteriophage T7 RNA polymerase

5 July 2018

1 reference

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Superhelical stress and nucleosome-mediated repression of 5S RNA gene transcription in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1170314

5 July 2018

Nucleosome positioning

1 reference

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Multiple retinoid-responsive receptors in a single cell: families of retinoid "X" receptors and retinoic acid receptors in the Xenopus egg

5 July 2018

1 reference

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Reconstitution of chromatin core particles

5 July 2018

1 reference

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Folding of the DNA double helix in chromatin-like structures from simian virus 40

5 July 2018

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A role for transcription and FRGY2 in masking maternal mRNA within Xenopus oocytes.

5 July 2018

1 reference

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Disruption of reconstituted nucleosomes. The effect of particle concentration, MgCl2 and KCl concentration, the histone tails, and temperature.

29 October 2018

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A positive role for histone acetylation in transcription factor access to nucleosomal DNA

29 October 2018

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12 December 2020

Histone-DNA contacts in a nucleosome core containing a Xenopus 5S rRNA gene

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12 December 2020

Interaction of high mobility group-I (Y) nonhistone proteins with nucleosome core particles

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12 December 2020

Translational positioning of a nucleosomal glucocorticoid response element modulates glucocorticoid receptor affinity

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12 December 2020

A single high affinity binding site for histone H1 in a nucleosome containing the Xenopus borealis 5 S ribosomal RNA gene

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12 December 2020

Nucleosome assembly on CTG triplet repeats

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12 December 2020

Site-directed cleavage of DNA by a linker histone--Fe(II) EDTA conjugate: localization of a globular domain binding site within a nucleosome

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12 December 2020

An asymmetric model for the nucleosome: a binding site for linker histones inside the DNA gyres

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12 December 2020

H1-mediated repression of transcription factor binding to a stably positioned nucleosome

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12 December 2020

Repression of transcription mediated at a thyroid hormone response element by the v-erb-A oncogene product

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12 December 2020

Structural features of a regulatory nucleosome

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12 December 2020

The mechanism of nucleosome assembly onto oligomers of the sea urchin 5 S DNA positioning sequence

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12 December 2020

Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones

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12 December 2020

The histone core exerts a dominant constraint on the structure of DNA in a nucleosome

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12 December 2020

Identifiers

DOI

10.1093/EMBOJ/16.23.7130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9384590%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9384590%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

PubMed publication ID

9384590

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9384590%20AND%20SRC:MED&resulttype=core&format=json