A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models (Q33853283)

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English	A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Inductive logic programming

1 reference

based on heuristic

inferred from title

inductive logic

1 reference

based on heuristic

inferred from title

logic programming

1 reference

based on heuristic

inferred from title

Alessandra Carbone

object named as

Alessandra Carbone

2

0 references

author name string

Juliana S Bernardes

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Gerson Zaverucha

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

23 March 2011

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

83

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

23 March 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

Physicochemical property distributions for accurate and rapid pairwise protein homology detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

A new generation of homology search tools based on probabilistic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Improving model construction of profile HMMs for remote homology detection through structural alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Motif kernel generated by genetic programming improves remote homology and fold detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Application of latent semantic analysis to protein remote homology detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Profile-based string kernels for remote homology detection and motif extraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Implicit motif distribution based hybrid computational kernel for sequence classification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Protein homology detection by HMM-HMM comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Protein ranking: from local to global structure in the protein similarity network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

SCOP database in 2004: refinements integrate structure and sequence family data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Profile-profile comparisons by COMPASS predict intricate homologies between protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Homology induction: the use of machine learning to improve sequence similarity searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Warmr: a data mining tool for chemical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

AAindex: amino acid index database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

The ASTRAL compendium for protein structure and sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Profile hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Hidden Markov models for sequence analysis: extension and analysis of the basic method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

5 July 2018

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Performance of an iterated T-HMM for homology detection

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Mismatch string kernels for discriminative protein classification

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Protein homology detection using string alignment kernels

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Profile-based direct kernels for remote homology detection and fold recognition

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Remote homology detection based on oligomer distances

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-83

21 January 2018

Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

29 October 2018

Efficient remote homology detection using local structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078102

29 October 2018

A discriminative framework for detecting remote protein homologies

1 reference

https://pubmed.ncbi.nlm.nih.gov/21429187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Remote homology detection: a motif based approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/21429187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Remote homolog detection using local sequence-structure correlations

1 reference

https://pubmed.ncbi.nlm.nih.gov/21429187

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-12-83

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

DBLP publication ID

journals/bmcbi/BernardesCZ11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

0 references

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