An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (Q33722829)

28 July 2017

title

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (English)

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28 July 2017

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Secreted endo-1,4-xylanase

5 February 2019

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5 February 2019

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Putative pectin acetylesterase

5 February 2019

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5 February 2019

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Serine-type carboxypeptidase Y family secreted neutral protease

5 February 2019

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Putative acid aspartic protease, constitutively expressed

5 February 2019

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5 February 2019

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Putative exopolygalacturonase/exoxylogalacturonan hydrolase

5 February 2019

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5 February 2019

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Vacuolar aminopeptidase Y family secreted protease

5 February 2019

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Carboxypeptidase Y family secreted protease

5 February 2019

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5 February 2019

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Putative exopolygalacturonase B

5 February 2019

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5 February 2019

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Extracellular alpha-glucosidase pro-protein

5 February 2019

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6 February 2019

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Putative arabinofuranosidase

6 February 2019

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Secreted lysosomal Pro-Xaa carboxypeptidase

6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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Putative exopolygalacturonase A

6 February 2019

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Pepsin family secreted acid protease

6 February 2019

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6 February 2019

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Putative exopolygalacturonase X

6 February 2019

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6 February 2019

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Carboxypeptidase Y family secreted protease

6 February 2019

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6 February 2019

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Pectin lyase A, involved in degradation of pectins

6 February 2019

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Aspergillopepsin A, a pepsin family secreted acid protease

6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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Pectate lyase involved in degradation of pectin

6 February 2019

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Putative exopolygalacturonase

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Elena Martens-Uzunova

object named as

Elena S Martens-Uzunova

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Peter J Schaap

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Machtelt Braaksma

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28 July 2017

Peter J Punt

series ordinal

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28 July 2017

language of work or name

English

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publication date

19 October 2010

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28 July 2017

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28 July 2017

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28 July 2017

page(s)

584

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The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The Proteomics Identifications database: 2010 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

PredGPI: a GPI-anchor predictor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Aspergillus niger genomics: past, present and into the future

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genome sequencing and analysis of Aspergillus oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Open mass spectrometry search algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Improved prediction of signal peptides: SignalP 3.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Feature-based prediction of non-classical and leaderless protein secretion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A combined transmembrane topology and signal peptide prediction method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Glycosylphosphatidylinositol-anchored glucanosyltransferases play an active role in the biosynthesis of the fungal cell wall

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The effect of environmental conditions on extracellular protease activity in controlled fermentations of Aspergillus niger

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Analysis of variance components reveals the contribution of sample processing to transcript variation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

An evolutionary conserved d-galacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Spectral index for assessment of differential protein expression in shotgun proteomics

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Isolation of four pepsin-like protease genes from Aspergillus niger and analysis of the effect of disruptions on heterologous laccase expression

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Extracellular prolyl endoprotease from Aspergillus niger and its use in the debittering of protein hydrolysates

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

The Hera database and its use in the characterization of endoplasmic reticulum proteins

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A novel oxidized low-density lipoprotein-binding protein, Asp-hemolysin, recognizes lysophosphatidylcholine

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091731

A profile hidden Markov model for signal peptides generated by HMMER

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The genetics of Aspergillus nidulans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analytical and computational approaches to define the Aspergillus niger secretome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20959013

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-584

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Dimensions Publication ID

28 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-584

9 September 2019

1 reference

28 July 2017

1 reference