Dicer is associated with ribosomal DNA chromatin in mammalian cells (Q33668649)

28 July 2017

title

Dicer is associated with ribosomal DNA chromatin in mammalian cells (English)

1 reference

28 July 2017

Petr Svoboda

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Witold Filipowicz

1 reference

28 July 2017

Lasse Sinkkonen

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28 July 2017

Tabea Hugenschmidt

series ordinal

1 reference

28 July 2017

language of work or name

English

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publication date

13 August 2010

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28 July 2017

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28 July 2017

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28 July 2017

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28 July 2017

page(s)

e12175

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Creative Commons Attribution 4.0 International

28 July 2017

start time

13 August 2010

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

Maintenance of a constitutive heterochromatin domain in vertebrates by a Dicer-dependent mechanism

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14 July 2018

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Quelling targets the rDNA locus and functions in rDNA copy number control

14 July 2018

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Small RNAs in transcriptional gene silencing and genome defence

14 July 2018

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RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1

14 July 2018

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Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

The RNAseIII enzyme Drosha is critical in T cells for preventing lethal inflammatory disease

14 July 2018

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The epigenetics of rRNA genes: from molecular to chromosome biology

14 July 2018

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The structure of NoRC-associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Promoter-wide hypermethylation of the ribosomal RNA gene promoter in the suicide brain

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases

14 July 2018

1 reference

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A role for RNAi in heterochromatin formation in Drosophila.

14 July 2018

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RNA sequence analysis defines Dicer's role in mouse embryonic stem cells

14 July 2018

1 reference

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Epigenetic programming of the rRNA promoter by MBD3.

14 July 2018

1 reference

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H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability

14 July 2018

1 reference

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Characterization of the short RNAs bound by the P19 suppressor of RNA silencing in mouse embryonic stem cells

14 July 2018

1 reference

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Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells

14 July 2018

1 reference

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Involvement of AGO1 and AGO2 in mammalian transcriptional silencing

14 July 2018

1 reference

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Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells

14 July 2018

1 reference

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Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Intergenic transcripts regulate the epigenetic state of rRNA genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

The chromatoid body of male germ cells: similarity with processing bodies and presence of Dicer and microRNA pathway components

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Dicer-dependent turnover of intergenic transcripts from the human beta-globin gene cluster

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Characterization of Dicer-deficient murine embryonic stem cells.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

The PHD finger/bromodomain of NoRC interacts with acetylated histone H4K16 and is sufficient for rDNA silencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Regulation of the human cyclin C gene via multiple vitamin D3-responsive regions in its promoter

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

The profile of repeat-associated histone lysine methylation states in the mouse epigenome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase I transcription machinery.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Dicer is essential for formation of the heterochromatin structure in vertebrate cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Long dsRNA and silent genes strike back:RNAi in mouse oocytes and early embryos

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Role of human ribosomal RNA (rRNA) promoter methylation and of methyl-CpG-binding protein MBD2 in the suppression of rRNA gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Epigenetic silencing of RNA polymerase I transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

RNA interference is required for normal centromere function in fission yeast

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

14 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012175

Aging results in hypermethylation of ribosomal DNA in sperm and liver of male rats

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Overlapping functions of the pRb family in the regulation of rRNA synthesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Human RNase III is a 160-kDa protein involved in preribosomal RNA processing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

Localization of a putative transcriptional regulator (ATRX) at pericentromeric heterochromatin and the short arms of acrocentric chromosomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

The mobile nature of acrocentric elements illustrated by three unusual chromosome variants

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

DNA methylation in the promoter of ribosomal RNA genes in human cells as determined by genomic sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921364

RNAi components are required for nuclear clustering of Polycomb group response elements.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012175

Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012175

Localization of the RNA polymerase I transcription factor hUBF during the cell cycle

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20730047

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20730047

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20730047

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0012175

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference